Gene
Gene Model ID | pfu_aug1.0_595.1_65533 |
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Locus | scaffold595.1 : 8816 ... 14396 : + |
To GenomeBrowser | scaffold595.1:8816..14396 |
Genes list of scaffold | scaffold595.1 |
Synonym | pfu_aug2.0_547.1_24160 |
Manual annotation
Study field | other developmental genes |
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Gene name | Tbx1/10 |
Description | Blast hits to Tbx1 and Tbx10.Simple NJ tree shows an affinity to HsTbx1 and HsTbx10. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_595.1_65533.t1 | 2 | 1 | rve | 78 | 181 | 1.6e-19 | 70.1 | 1.6e-22 | 1.2e-18 | 67.3 |
pfu_aug1.0_595.1_65533.t1 | 2 | 2 | rve | 199 | 233 | 1.6e-19 | 70.1 | 0.15 | 1100.0 | -0.4 |
Transcript
Transcript ID | pfu_aug1.0_595.1_65533.t1 |
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Definition | - |
>pfu_aug1.0_595.1_65533.t1 atgacagacgactacctccaaacaattttttacgatccaaagagtcctgccagttttgcaggagccagtaaactttgggc tcagtcccaggctgatggtaaaaacataagcaagtatcgtatacaaaaatggctacaaagccaagataattataccctca ctcgtcaagtgaggcggacttttcctcgaaatcgtgtcgtggtggagggtttagatagtcagtgggaggcagacttgatg gatctgacgtcagtggccaaagacaacaagggttataaatacgtcttaatcaccatagacgtgttttcgagatacgtctg cggaagaccgctcaaagacaaaacctctaaatcagtggtgggggctatgaatgacatcctggctatgggcagacaacctt ctctgttacgtaccgacaaaggatccgaattcaaaaacaaagagttctctcttttctgtaaaagaaaaggtatcaaacac ttttggacacagaacgaaacgaaatgcgcatatgccgagcgagtgatcaagacccttaaaatgaaaatttacagaatgat gacgaatcggcataatgagtacgttgaccaactgccggacatcatcaacagctacaatcacacattccatcggtctttgg gtacgcaacccatcctagttactaaagacaacgaaagcgaaatacgcttacagcaatatcttcgacgaccgaaaagtaaa agacgaatcaaaaagaaggcctatgttttgaagctgggtgatcttgtccgcatatcccatctcaaaagtaaatttgatcg agagtatcaacagaaatacacgggtgaaatatttagagtcaagaatagaagaaggagagacaacattcatgtgtatacat tggaagattgggacaaagaccccattgaaggaactttttatgcacaggaattgcaaaaggtcattgtcgatccgacggca ccattcaagattcaaaagattatgaagcggaaaagaggacaaaccatcatggatcaattggaacatagtttgacattgtt tgaaaaacagcctcagaagacgggcattctgggcaaagattttgtagaatacagacctgtcaatcaaatagcggacgatt cacccttagaattcaacattcctgcagcctccatcaactatgtcgatttaaaacgcaccaggctccatatcaancaacaa gatagactgctcatgaacggggttcctatcacaatcaaactctggcctcattctaacaaatttaaactgatggctatgac cgatgattacaaggtcaacttgaaagatgcctatcttaaaatttgtacggtaaaacttaatcccggagtactactaggac acaacgaagcaattcagaagatgccggcctgctatccattcatgaagtctatcatcaaaacattttccctctcgcctgga cattatgcattcaatgccgatgacttgtttcaaggggatgtccctaattcacttgttatcgggtgcgtagcctctagcgc ttttaacggaagttatgacaagaatccgctcaacttttatcattacaattgtacctttgtgaactttatggttgatgggc aaacaattccctccagaccacttcaacccgattacgaaaatgaaaattacttggaggcttttcaaaccttgtttgcagat agagaaaagtcattgaatatatcaaggagctcatatccaaagggatattgcctctacgtcattaagactcaagaagctaa tgatacctctaccctcaaaaaaggacacacccgcttggagttaaagtttgcacatgcactaccagaatctgtaactcttg tattgtatgccaagtttcctagtctgttacaaatagaccaagccaggaatgtcttcacttga |
Protein
Protein ID | pfu_aug1.0_595.1_65533.t1 |
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Definition | - |
>pfu_aug1.0_595.1_65533.t1 MTDDYLQTIFYDPKSPASFAGASKLWAQSQADGKNISKYRIQKWLQSQDNYTLTRQVRRTFPRNRVVVEGLDSQWEADLM DLTSVAKDNKGYKYVLITIDVFSRYVCGRPLKDKTSKSVVGAMNDILAMGRQPSLLRTDKGSEFKNKEFSLFCKRKGIKH FWTQNETKCAYAERVIKTLKMKIYRMMTNRHNEYVDQLPDIINSYNHTFHRSLGTQPILVTKDNESEIRLQQYLRRPKSK RRIKKKAYVLKLGDLVRISHLKSKFDREYQQKYTGEIFRVKNRRRRDNIHVYTLEDWDKDPIEGTFYAQELQKVIVDPTA PFKIQKIMKRKRGQTIMDQLEHSLTLFEKQPQKTGILGKDFVEYRPVNQIADDSPLEFNIPAASINYVDLKRTRLHIXQQ DRLLMNGVPITIKLWPHSNKFKLMAMTDDYKVNLKDAYLKICTVKLNPGVLLGHNEAIQKMPACYPFMKSIIKTFSLSPG HYAFNADDLFQGDVPNSLVIGCVASSAFNGSYDKNPLNFYHYNCTFVNFMVDGQTIPSRPLQPDYENENYLEAFQTLFAD REKSLNISRSSYPKGYCLYVIKTQEANDTSTLKKGHTRLELKFAHALPESVTLVLYAKFPSLLQIDQARNVFT |