Gene
Gene Model ID | pfu_aug1.0_595.1_65534 |
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Locus | scaffold595.1 : 20806 ... 33136 : + |
To GenomeBrowser | scaffold595.1:20806..33136 |
Genes list of scaffold | scaffold595.1 |
Synonym | pfu_aug2.0_992.1_08069 |
Manual annotation
Study field | other developmental genes |
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Gene name | OTX |
Description | BLAST best hits to NCBI AF440098.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_595.1_65534.t1 | 2 | 1 | Homeobox | 59 | 115 | 3.0e-22 | 77.9 | 1.1e-25 | 7.9e-22 | 76.6 |
pfu_aug1.0_595.1_65534.t1 | 1 | 1 | TF_Otx | 166 | 220 | 7.5e-10 | 38.9 | 1.0e-13 | 7.5e-10 | 38.9 |
pfu_aug1.0_595.1_65534.t1 | 2 | 2 | Homeobox | 208 | 237 | 3.0e-22 | 77.9 | 0.66 | 4900.0 | -2.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_595.1_65534.t1 | gi|74100011|gb|AAZ99218.1| | orthodenticle-like protein [Octopus bimaculoides] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_595.1_65534.t1 |
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Definition | - |
>pfu_aug1.0_595.1_65534.t1 atgtctatggccagtatggcgtactcacagccgtcagtgctgccccctgtatccaaggctccttactctgtcaacggaat cagtttgtccgctccaaacgttgatctgatgcatccagcaatggggtatcctcctgacatgtatctatctacagccaaca acccccgcaaacagaggagggagcgtacaaccttcacccgcgcccagctggacgtactggagtccctcttccagaaaaca cgctaccccgacatcttcatgagggaggaagtggcactcaaaatcaatctacctgaatccagagtacaggtatggttcaa gaatagaagagctaagtgcagacagcaacagaaagctcaggacggtaaatccaaacctccaacaccaaagaaggccaaat cacctccccctccttcaacatcacccgtagactgcaaaccacccgccttcagtaacgccatgacaaatggtcccatgaac actcagtcaatatggagtccggcagccattcctcctgtcaacgacattctaaattccaatagctgtatgcagcgtggtgg ttatcccatgccaaacagtcacagcgccgcgtactctcaacaaccatacggtcattccagttactatggtaacatggact atttgaatcacatgcagcttccagtggtctcgaatcaaatgggacagtctgtaaacggcaaccaagtgtcttatggcgcc atgggggcacctcaaatttcccgcggaaaccactcagattgtctcgaatataaagacacatcatcatggcctaaattcca agttttgtga |
Protein
Protein ID | pfu_aug1.0_595.1_65534.t1 |
---|---|
Definition | - |
>pfu_aug1.0_595.1_65534.t1 MSMASMAYSQPSVLPPVSKAPYSVNGISLSAPNVDLMHPAMGYPPDMYLSTANNPRKQRRERTTFTRAQLDVLESLFQKT RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQKAQDGKSKPPTPKKAKSPPPPSTSPVDCKPPAFSNAMTNGPMN TQSIWSPAAIPPVNDILNSNSCMQRGGYPMPNSHSAAYSQQPYGHSSYYGNMDYLNHMQLPVVSNQMGQSVNGNQVSYGA MGAPQISRGNHSDCLEYKDTSSWPKFQVL |