Gene
| Gene Model ID | pfu_aug1.0_5975.1_59906 |
|---|---|
| Locus | scaffold5975.1 : 45821 ... 49855 : - |
| To GenomeBrowser | scaffold5975.1:45821..49855 |
| Genes list of scaffold | scaffold5975.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | snail-like |
| Description | NCBI BLASTP hit to gb|AAL06240.1| Sna1 [Patella vulgata] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-H2C2_2 | 216 | 229 | 1.4e-22 | 78.7 | 0.0017 | 2.7 | 8.4 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-C2H2 | 218 | 240 | 3.2e-24 | 83.7 | 3.5e-06 | 0.0057 | 16.9 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-C2H2_4 | 218 | 238 | 8.0e-16 | 57.1 | 0.00067 | 1.1 | 9.7 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-C2H2_6 | 218 | 242 | 1.7e-10 | 40.3 | 2.7e-07 | 0.00045 | 20.0 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-met | 218 | 236 | 1.2e-06 | 28.4 | 0.016 | 26.0 | 5.2 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 1 | zf-C2H2_jaz | 219 | 236 | 4.5e-12 | 45.7 | 0.14 | 230.0 | 2.0 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-H2C2_2 | 233 | 259 | 1.4e-22 | 78.7 | 1.1e-05 | 0.017 | 15.3 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-C2H2 | 249 | 271 | 3.2e-24 | 83.7 | 8.2e-08 | 0.00014 | 22.0 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-C2H2_4 | 249 | 271 | 8.0e-16 | 57.1 | 5.7e-06 | 0.0094 | 16.2 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-C2H2_jaz | 249 | 271 | 4.5e-12 | 45.7 | 4.0e-05 | 0.066 | 13.3 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-C2H2_6 | 249 | 271 | 1.7e-10 | 40.3 | 6.5e-05 | 0.11 | 12.4 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 2 | zf-met | 249 | 269 | 1.2e-06 | 28.4 | 0.00018 | 0.3 | 11.3 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-H2C2_2 | 263 | 286 | 1.4e-22 | 78.7 | 1.6e-06 | 0.0026 | 17.9 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-C2H2 | 276 | 297 | 3.2e-24 | 83.7 | 2.7e-09 | 4.5e-06 | 26.6 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-C2H2_4 | 276 | 297 | 8.0e-16 | 57.1 | 3.2e-07 | 0.00053 | 20.1 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-C2H2_6 | 276 | 297 | 1.7e-10 | 40.3 | 0.0008 | 1.3 | 9.0 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-C2H2_jaz | 277 | 297 | 4.5e-12 | 45.7 | 0.0007 | 1.2 | 9.4 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 3 | zf-met | 277 | 296 | 1.2e-06 | 28.4 | 0.0004 | 0.66 | 10.2 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-H2C2_2 | 290 | 313 | 1.4e-22 | 78.7 | 3.7e-10 | 6.1e-07 | 29.4 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-C2H2 | 303 | 325 | 3.2e-24 | 83.7 | 5.5e-07 | 0.00091 | 19.4 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-C2H2_4 | 303 | 325 | 8.0e-16 | 57.1 | 4.1e-05 | 0.068 | 13.5 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-C2H2_jaz | 303 | 325 | 4.5e-12 | 45.7 | 9.1e-07 | 0.0015 | 18.6 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-C2H2_6 | 303 | 326 | 1.7e-10 | 40.3 | 0.00011 | 0.19 | 11.6 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 4 | zf-met | 303 | 323 | 1.2e-06 | 28.4 | 0.005 | 8.2 | 6.7 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-H2C2_2 | 317 | 342 | 1.4e-22 | 78.7 | 4.8e-09 | 7.8e-06 | 25.9 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-C2H2 | 331 | 351 | 3.2e-24 | 83.7 | 3.9e-07 | 0.00064 | 19.9 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-C2H2_4 | 331 | 350 | 8.0e-16 | 57.1 | 3.1e-05 | 0.051 | 13.9 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-C2H2_jaz | 331 | 349 | 4.5e-12 | 45.7 | 0.00027 | 0.45 | 10.7 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-C2H2_6 | 331 | 351 | 1.7e-10 | 40.3 | 5.0e-05 | 0.082 | 12.8 |
| pfu_aug1.0_5975.1_59906.t1 | 5 | 5 | zf-met | 332 | 349 | 1.2e-06 | 28.4 | 0.0092 | 15.0 | 5.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5975.1_59906.t1 | gi|17223770|gb|AAL06240.1| | Sna1 [Patella vulgata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5975.1_59906.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5975.1_59906.t1 atggacattgataaaattttgggaaaagaacaaaatagaagcagtaatgctcaagactcaatgaagattgataaatcaga gctaagaaaaagagatcctattggtcaattactggacagcctttgtaattcatccaaagaaaaagagaaaaaagaaaact cgaatcaagtggacaaagctttagatgatgcaagtgcttttacgccattttccaaaccaaggcaaattcattcctcagga cctaaaagcgttggcagtgatgattttcacagaggaaatgacgtcacatcatggaccttgccgatgtcacatagttattt tcatggataccgacatttttataacccattggatacttccatgttaagtccgaaaaatcattcaacagtttcctctcctg gaatgcattatccaatcccttcgtcattggtaaaccatcctacgccgtatcaaattgcgtatcccggaactcggcattcg caaaatttttcaagttttcagcattttgccggtacattaccgtattttgcgtcaagatatttgcaaacgggactggaaac ttttgcgcaaggccaaaaacagccgaactctcaaaatttcgacattttcgagaagaaagagaaagctcagtatgtttctg cggcgccaagataccaatgtgaggactgtaaaaagagctattcaacatacggcgggctaacaaaacacaaacaattccac tgctcaacgcaacagaaaaaggaattcgtatgcaaattttgcggaaagtcgtacggatccctcggtgctttaaaaatgca catacggacgcatactcttccgtgtaagtgtaaaatttgcggaaaagcgttctcacgaccatggttgttacagggacata tgcgcacgcatactggcgagaaaccgttttcttgtctccattgtgcacgcgcattcgccgatagatcaaatctgcgtgcg catttgcaaacacactctgacgtaaagaaatacgcatgtaagtcatgcagtaaaacattttctagaatgtcactgttgat aaaacacagggagaacaataattgtgtttaa |
|
Protein
| Protein ID | pfu_aug1.0_5975.1_59906.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5975.1_59906.t1 MDIDKILGKEQNRSSNAQDSMKIDKSELRKRDPIGQLLDSLCNSSKEKEKKENSNQVDKALDDASAFTPFSKPRQIHSSG PKSVGSDDFHRGNDVTSWTLPMSHSYFHGYRHFYNPLDTSMLSPKNHSTVSSPGMHYPIPSSLVNHPTPYQIAYPGTRHS QNFSSFQHFAGTLPYFASRYLQTGLETFAQGQKQPNSQNFDIFEKKEKAQYVSAAPRYQCEDCKKSYSTYGGLTKHKQFH CSTQQKKEFVCKFCGKSYGSLGALKMHIRTHTLPCKCKICGKAFSRPWLLQGHMRTHTGEKPFSCLHCARAFADRSNLRA HLQTHSDVKKYACKSCSKTFSRMSLLIKHRENNNCV |
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