Gene
Gene Model ID | pfu_aug1.0_5975.1_59907 |
---|---|
Locus | scaffold5975.1 : 54556 ... 65475 : - |
To GenomeBrowser | scaffold5975.1:54556..65475 |
Genes list of scaffold | scaffold5975.1 |
Synonym | pfu_aug2.0_133.1_10320 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5975.1_59907.t1 | 1 | 1 | rve | 63 | 119 | 2.5e-12 | 46.9 | 3.2e-15 | 6.0e-12 | 45.7 |
pfu_aug1.0_5975.1_59907.t1 | 1 | 1 | SK_channel | 236 | 351 | 1.4e-25 | 89.4 | 7.5e-29 | 1.4e-25 | 89.4 |
pfu_aug1.0_5975.1_59907.t1 | 2 | 1 | Ion_trans_2 | 254 | 272 | 5.0e-13 | 48.5 | 0.63 | 1200.0 | -0.7 |
pfu_aug1.0_5975.1_59907.t1 | 2 | 2 | Ion_trans_2 | 429 | 510 | 5.0e-13 | 48.5 | 2.7e-16 | 5.0e-13 | 48.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5975.1_59907.t1 | gi|301774244|ref|XP_002922531.1| | PREDICTED: small conductance calcium-activated potassium channel protein 3 isoform X1 [Ailuropoda melanoleuca] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_5975.1_59907.t1 |
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Definition | - |
>pfu_aug1.0_5975.1_59907.t1 atgagatcaatgcgaagtctcgtgaccgtggtcgccccgtacaccctgcacacagcgaatatcgcagacgaactacccac cgaactccgttccacaggcagaagccacaattgcagaaaccgtatgttccaaaaacagaacacaggccgccttaaccaaa gaccaaaccgaacaaatccacgcttaacatttggtatacctgaaaaggtagtatctgacaatggccccccccagtacagc tcttcagatttcacgaaattctcatcagaatatggcttcatgcacactacctctagtcccaggtacccccaatcaaatgg cctagctgaaagaactgtccagactatcaaacgaatctttcagaaagctaaagacagtaaaagcgacccctaccttggac tcttagaataccgtaatactcctattgacaattctggcaactctcctgcagaattactgcaaggtcgtcaattaaggtcc atattacccatactgcaatcacagctaccccctaaggtcatggattacagtcatgcaaggagaatgaatgatgtctgtct ggaaatggacaaccctaaaacaccactctgtaaatctgaccgcatcaggatgaagtatatggggaataacccggaaacag atccaaagaaaaacactactggcggcaaaaccggaaacggaaatatgcttccgttgggggcaaaaattaaacgccgcacc agcttggtgaatcgccgtcgatggatagtaaatttagaattcttcttagctatggtgggaattatcattatgatgataga aacggaactattcatcaagtataaagtggagaagacatcgatgacgtcattctctctaaagtgcgtcatttccgctacaa cagcgatgcttcttgtgtctatatgtatgtattattacactggagcgcagatcaaagcgatagacaccggagtcaaggat tgggtgtcggtgatatcatcgtggactgttttgtcgatgaccactgaactgttggtatgttcaatccatcccttccccgg ggatttgaaaatggagtatgtatcccccatcggtactggtcacaaagtgagcgtggacgctgtgttatccattgtgatga tgtcacgattgtatttggtcgcaaaattcgccgttgcgcatagtcggctccttacagatacatccacccatagtatagga gcactgagtaaagtgaaaatcaacactttattcgtcttcaaagccgccatgacaaacaaaccgggtcaactacttctgtt cgtgatgattatgacatttctggtcaattgctgggcaatgaggacttgtgaattgtattatgaaaggggcaacatcgaaa agaattcgtaccttgaaattatgtggctgattgcaataacgttccttactgtcgggtatggtgataaaacccctcggagc tactgtgggcgttatatttccatagtaacaggggcaatgggcgtggtcacaacagctcttttggttgccatcatagcacg gcagctagaacaatcaagaccggaacgatacgtattcaattttgtctcaaggatgcaggtcaaatatcgaattaaaacgg cagcggcgaatgtcatcaaggccaccttaagaatttggattttacgacaatatggtgatgaatttaagcgcgaaattcga aaatacgacgacaaattaaaacaaggattaaaagaaatcaaaaatgcaaaggaggaaatggaacacataggggaagacgc ggtagggatcgttgacgtcattcatggtgtagagcgaattggtttacagcttgaaaagaaattgaatcgaattgactatt tggagaaacacgttaccgaccttcaagatcagttccaaaccattgatcaaaaactggaggacattaagggcatgctactt aaacgttaa |
Protein
Protein ID | pfu_aug1.0_5975.1_59907.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5975.1_59907.t1 MRSMRSLVTVVAPYTLHTANIADELPTELRSTGRSHNCRNRMFQKQNTGRLNQRPNRTNPRLTFGIPEKVVSDNGPPQYS SSDFTKFSSEYGFMHTTSSPRYPQSNGLAERTVQTIKRIFQKAKDSKSDPYLGLLEYRNTPIDNSGNSPAELLQGRQLRS ILPILQSQLPPKVMDYSHARRMNDVCLEMDNPKTPLCKSDRIRMKYMGNNPETDPKKNTTGGKTGNGNMLPLGAKIKRRT SLVNRRRWIVNLEFFLAMVGIIIMMIETELFIKYKVEKTSMTSFSLKCVISATTAMLLVSICMYYYTGAQIKAIDTGVKD WVSVISSWTVLSMTTELLVCSIHPFPGDLKMEYVSPIGTGHKVSVDAVLSIVMMSRLYLVAKFAVAHSRLLTDTSTHSIG ALSKVKINTLFVFKAAMTNKPGQLLLFVMIMTFLVNCWAMRTCELYYERGNIEKNSYLEIMWLIAITFLTVGYGDKTPRS YCGRYISIVTGAMGVVTTALLVAIIARQLEQSRPERYVFNFVSRMQVKYRIKTAAANVIKATLRIWILRQYGDEFKREIR KYDDKLKQGLKEIKNAKEEMEHIGEDAVGIVDVIHGVERIGLQLEKKLNRIDYLEKHVTDLQDQFQTIDQKLEDIKGMLL KR |