Gene
| Gene Model ID | pfu_aug1.0_5979.1_31099 |
|---|---|
| Locus | scaffold5979.1 : 28453 ... 31455 : - |
| To GenomeBrowser | scaffold5979.1:28453..31455 |
| Genes list of scaffold | scaffold5979.1 |
| Synonym | pfu_aug2.0_16.1_20068 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5979.1_31099.t1 | 3 | 1 | RRM_1 | 2 | 62 | 0.0 | 174.5 | 8.5e-21 | 2.1e-17 | 62.5 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 1 | RRM_6 | 2 | 62 | 3.3e-34 | 116.6 | 4.6e-13 | 1.1e-09 | 38.0 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 1 | RRM_5 | 8 | 66 | 3.6e-32 | 109.9 | 2.5e-14 | 6.1e-11 | 41.9 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 2 | RRM_6 | 74 | 140 | 3.3e-34 | 116.6 | 1.3e-10 | 3.3e-07 | 30.1 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 2 | RRM_1 | 75 | 140 | 0.0 | 174.5 | 4.2e-17 | 1.0e-13 | 50.6 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 2 | RRM_5 | 88 | 148 | 3.6e-32 | 109.9 | 4.0e-11 | 1.0e-07 | 31.7 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 3 | RRM_1 | 187 | 257 | 0.0 | 174.5 | 9.6e-20 | 2.4e-16 | 59.1 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 3 | RRM_6 | 187 | 257 | 3.3e-34 | 116.6 | 2.5e-15 | 6.2e-12 | 45.3 |
| pfu_aug1.0_5979.1_31099.t1 | 3 | 3 | RRM_5 | 201 | 261 | 3.6e-32 | 109.9 | 1.2e-11 | 2.9e-08 | 33.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5979.1_31099.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5979.1_31099.t1 atgtcagatgcacaacttgaaacccttttcttggagattggaacaatcaaatcatgtcgtattattagagataagaggac aaaatacagctatgggtttgggtttgtagagtaccataacgaagaagatgctacaaaggcaatcacctcccttgatggat tgaatctggaaaacaagaggattaaggttgcttatagcggaaatactaggaaaggtattttggctattgaaaaccttcca acagattatggggaggaggaacttcggaatcagtttcagcaatatggagagatcgtaaatactaaagtaatgcgatctaa aggaagtgacgtgtccaacgggagagggattgtcacctttcagaagatatctgacactgaaaaagctaagacagatttga aaggaaaaattctctctggtggagtaaagccgttggagatcagaatgaagaatactttggggaaaatgacttattttgca agtaaattgaagtataattccgagggaggtttcagcattgataacgataacacaaagcaggatcagaaagtttatacttt atttgtctacaacattggtagacaggtagacgcaactatattatggcaaatgtttgcaccattaggaaaggtaaaacgcg cacttgttgtttatgacaaggaaactgggttatccaaaaattacggatttgtaaaaatggaaaactatagtgatgcttgc aatgcaattaaccatatgaatggaggcactctcgatggaaaggagctgaaagtggatttcagtagaaaccaaaaccagag tgaggaagaaaatctccaatga |
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Protein
| Protein ID | pfu_aug1.0_5979.1_31099.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5979.1_31099.t1 MSDAQLETLFLEIGTIKSCRIIRDKRTKYSYGFGFVEYHNEEDATKAITSLDGLNLENKRIKVAYSGNTRKGILAIENLP TDYGEEELRNQFQQYGEIVNTKVMRSKGSDVSNGRGIVTFQKISDTEKAKTDLKGKILSGGVKPLEIRMKNTLGKMTYFA SKLKYNSEGGFSIDNDNTKQDQKVYTLFVYNIGRQVDATILWQMFAPLGKVKRALVVYDKETGLSKNYGFVKMENYSDAC NAINHMNGGTLDGKELKVDFSRNQNQSEEENLQ |
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