Gene
| Gene Model ID | pfu_aug1.0_5986.1_16809 |
|---|---|
| Locus | scaffold5986.1 : 1 ... 5222 : + |
| To GenomeBrowser | scaffold5986.1:1..5222 |
| Genes list of scaffold | scaffold5986.1 |
| Synonym | pfu_aug2.0_10911.1_06452 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5986.1_16809.t1 | 2 | 1 | Collagen | 2 | 57 | 6.4e-17 | 60.8 | 9.4e-14 | 7.0e-10 | 38.3 |
| pfu_aug1.0_5986.1_16809.t1 | 2 | 2 | Collagen | 30 | 82 | 6.4e-17 | 60.8 | 6.9e-13 | 5.1e-09 | 35.5 |
| pfu_aug1.0_5986.1_16809.t1 | 1 | 1 | COLFI | 157 | 217 | 7.8e-20 | 71.1 | 1.5e-23 | 1.1e-19 | 70.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5986.1_16809.t1 | gi|110761872|ref|XP_391942.3| | 3.0e-21 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5986.1_16809.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5986.1_16809.t1 cccccgggcgtgataggtgaccctggacctaaaggtgaacccgggccagctggtcctccaggggagaggggtgaaaaagg agatcttggaccagaaggacccactggatttactggacccgaaggacaaccgggaatgccgggaccacctgggctacctg gatcaaaaggagaatcgggtagttcgggtatcaaaggtgaaccaggtccacagggaccaccaggctcgcccggtgcccca ggtgaagcccaggccttcccagcagatctgcttggtgccccattcaaggcccgtaggagaagatcagcacctcaacagca agctcaacaacaaaactatgcaacaacatccattaatgacatgtttgcagacatgggaagcaaaccattggagcttggtg aaggcgttacaatgcttgttggaaaaatgtttgagggattgtatgaactggacaaccaagttaacatgattatgaatcct accggcaaaatagactaccctgctcaaacttgcaaagacatcaaaatgagttggcctgactctaagaacggggattattg gattgatccaaacggcggtgctataggagataagatgaaggtctggtgtaacatgacgggcgatggggctacctgtgtat atccattggatcgcacgagaagggtataa |
|
Protein
| Protein ID | pfu_aug1.0_5986.1_16809.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5986.1_16809.t1 PPGVIGDPGPKGEPGPAGPPGERGEKGDLGPEGPTGFTGPEGQPGMPGPPGLPGSKGESGSSGIKGEPGPQGPPGSPGAP GEAQAFPADLLGAPFKARRRRSAPQQQAQQQNYATTSINDMFADMGSKPLELGEGVTMLVGKMFEGLYELDNQVNMIMNP TGKIDYPAQTCKDIKMSWPDSKNGDYWIDPNGGAIGDKMKVWCNMTGDGATCVYPLDRTRRV |
|