Gene
| Gene Model ID | pfu_aug1.0_5991.1_16813 |
|---|---|
| Locus | scaffold5991.1 : 51276 ... 64279 : + |
| To GenomeBrowser | scaffold5991.1:51276..64279 |
| Genes list of scaffold | scaffold5991.1 |
| Synonym | pfu_aug2.0_1472.1_08392 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | pentagone-like |
| Description | NCBI BLASTP hit to ref|XP_003472342.1| [Cavia porcellus] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5991.1_16813.t1 | 1 | 1 | Thyroglobulin_1 | 12 | 73 | 3.6e-13 | 48.6 | 2.7e-16 | 7.9e-13 | 47.5 |
| pfu_aug1.0_5991.1_16813.t1 | 1 | 1 | SPARC_Ca_bdg | 93 | 191 | 9.1e-16 | 57.8 | 3.1e-19 | 9.1e-16 | 57.8 |
| pfu_aug1.0_5991.1_16813.t1 | 2 | 1 | EF-hand_1 | 136 | 152 | 7.3e-06 | 24.9 | 0.0017 | 5.1 | 6.6 |
| pfu_aug1.0_5991.1_16813.t1 | 2 | 2 | EF-hand_1 | 170 | 192 | 7.3e-06 | 24.9 | 2.6e-06 | 0.0077 | 15.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5991.1_16813.t1 | gi|241649866|ref|XP_002410178.1| | hypothetical protein IscW_ISCW019551 [Ixodes scapularis] | 3.0e-35 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5991.1_16813.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5991.1_16813.t1 atggatgataagactcgagactgcatcgaggaaaggaaaaacgctctcctgcagcatcagcaggacccggatggaaaaac atatatcccaagatgcaccgttcttgggaagtgggacaaggcacaatgtcacgaatcctcacaatactgttggtgtgtgg aggaggagacgggcaagcctatacccggcacatctacgcacaaagtcatgccaaagtgtgatcaaatcacagataggcaa atgaaaggttgccccctaggcaagaaaagaaaattcttgaaagagatgatcagcaaaatgttggaagatatgagaatgta caaacagaatggatctgatttaagtaaattaccatctggttcttctggaatgagtgaacaggaagtggcagtccgatgga agttaaacattcttgatgtcaactctaactctaaaatagacaagagagaaatgaaaccattgaggagagagttaccaaag aaaaaagataccagaaaatgtaggcgaaattttattcggtattgtgatgccgataatgacaagaaaataacctcagatga atggatagattgtatggggatcaaaaataatatattgcctctgcctgataatccaaacagaaggggtcccaatccttttg atcagtatttgagaccaagttaa |
|
Protein
| Protein ID | pfu_aug1.0_5991.1_16813.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5991.1_16813.t1 MDDKTRDCIEERKNALLQHQQDPDGKTYIPRCTVLGKWDKAQCHESSQYCWCVEEETGKPIPGTSTHKVMPKCDQITDRQ MKGCPLGKKRKFLKEMISKMLEDMRMYKQNGSDLSKLPSGSSGMSEQEVAVRWKLNILDVNSNSKIDKREMKPLRRELPK KKDTRKCRRNFIRYCDADNDKKITSDEWIDCMGIKNNILPLPDNPNRRGPNPFDQYLRPS |
|