Gene
| Gene Model ID | pfu_aug1.0_5997.1_31104 |
|---|---|
| Locus | scaffold5997.1 : 10886 ... 19605 : - |
| To GenomeBrowser | scaffold5997.1:10886..19605 |
| Genes list of scaffold | scaffold5997.1 |
| Synonym | pfu_aug2.0_599.1_30956 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5997.1_31104.t1 | 1 | 1 | OSCP | 31 | 165 | 1.2e-29 | 103.4 | 1.9e-33 | 1.4e-29 | 103.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5997.1_31104.t1 | gi|291221347|ref|XP_002730685.1| | PREDICTED: ATP synthase subunit O, mitochondrial-like [Saccoglossus kowalevskii] | 2.99878e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5997.1_31104.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5997.1_31104.t1 atgccttatccactcattgaagtgaggcagtttagcacatctactgtctgtagaaaaatcgtacagcctccaatacaagt ctatggtctagagggaaactatgccacagctctctactcggcagcatctaaggaaaagaaagtagatgtagtggagaaag acctcgcatctttccgtgagttattaaagaaagatgtcaaatttgcagacttcttgctagatccaactcagaataaaaaa gtcaagaaagaaatgatggacaaagttgtgaagaaaatgaactattccagtcttacagcaaatcttgttgatgccttgtc agaaaatggtaggattaacagactagatgctgtcgtcaaagctttctcaaaaatcatgagtgctcacagaggagaggtcc tatgtactgtaatcacagctcagccccttgacgatgcttcttcaaaagaattagaaggagcacttaaaggcttcttgaag gctggccagaaacttcagatagagaaagaggatgcatataaaatcaaggtttaa |
|
Protein
| Protein ID | pfu_aug1.0_5997.1_31104.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5997.1_31104.t1 MPYPLIEVRQFSTSTVCRKIVQPPIQVYGLEGNYATALYSAASKEKKVDVVEKDLASFRELLKKDVKFADFLLDPTQNKK VKKEMMDKVVKKMNYSSLTANLVDALSENGRINRLDAVVKAFSKIMSAHRGEVLCTVITAQPLDDASSKELEGALKGFLK AGQKLQIEKEDAYKIKV |
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