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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_6.1_57879
Locus scaffold6.1 : 22436 ... 36535 : -
To GenomeBrowser scaffold6.1:22436..36535
Genes list of scaffold scaffold6.1
Synonym pfu_aug2.0_486.1_20832

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_6.1_57879.t1 2 1 Neur_chan_LBD 26 76 1.6e-36 125.5 5.4e-06 0.04 13.0
pfu_aug1.0_6.1_57879.t1 2 2 Neur_chan_LBD 132 275 1.6e-36 125.5 9.9e-36 7.3e-32 110.2
pfu_aug1.0_6.1_57879.t1 1 1 Neur_chan_memb 282 499 4.3e-27 95.5 1.2e-30 9.0e-27 94.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_6.1_57879.t1 gi|321465213|gb|EFX76216.1| hypothetical protein DAPPUDRAFT_55424, partial [Daphnia pulex] 0.0

Transcript
Transcript IDpfu_aug1.0_6.1_57879.t1
Definition-
>pfu_aug1.0_6.1_57879.t1
atgaggtcggcactcattcatttatcagttttagctgtatttttcctaagaacagatgctgagttcttggacacattcgt
gacggcactgtttgcagattacgagaaggatatccgaccttactgtatggacaacggaacatcgatccccactaacgtcc
acatggatttgtccttaagacagataattgatttggtgaatacatttccatatctttctttgcatttaatgatcagtgac
attctgggttgcgatcgaatggctatcatcatcatcatcatcatcaaacaagacatgtacattaatatgcacatcgagac
aataaccgaattggacaagttttcatggagctgttacgacgggtcctacatacagataggagacttcggaatactggtct
ggaacgacacaggaagcttcgccgttgatacaattatggtacctgaaacaagggtctggattccagatctgacactctat
gacaacagtgctgcatctacccttcctggtcttaaagactatgtagcaacggtaaaagacaatggtgatgtaaagtacaa
ttttccatctgttataaacagcatgtgtgccatagacgtacgttacttcccctttgattatcagagttgttctttagagt
ttggatcttgggcgtctccagggagtggtatcaacatatctgctctcaaaacatcggttgatatggacaattacatagaa
aacattgagtggtccgttatcagcactaaagctatcagaaaagaaaaacagtatgaagagacctacccgtcaattatctt
cactctatcactcagacggaagcctttattctacatgatgaatatgattttcccgtgtttgctgattacttttgttgccg
tgttcggttttatgctaccgccagactctggagagaaagtaaatttggaggtcacagtcttgttgtcgctggccgttttt
cagctgattgtcttggacttgatacctgcatccggggattctacccctttcataggtatttatttcatgacttccatggt
actagtaggcatgtcctgcctgatgacagtgatagtattacagatccacttccgaggctgcaatagccgccaaatatcac
cctggatatacaagcggattatgataccattggcaaaaataacctttgtgcaattacaaccagatacattgttagacaga
caacagagtctcataacaaggaaaatgtccatccgtccaaacaaaatctacatgaatggtacgtcatcagatacgtttgt
agaacactctgagagacatcctttccttcccgatatgaaagaaataatttcattggtcaacaaaataacagcaaacgtgg
acgccattacacaagttgtatgtgactcggacgaaggtgacgtcataaagttgcaatggagtattctcgccaccattttt
gacagattatttcttgcagtttatatcactgtctcagtaattacaacactgtccatattattacaatttcaaggagctca
gtga

Protein
Protein IDpfu_aug1.0_6.1_57879.t1
Definition-
>pfu_aug1.0_6.1_57879.t1
MRSALIHLSVLAVFFLRTDAEFLDTFVTALFADYEKDIRPYCMDNGTSIPTNVHMDLSLRQIIDLVNTFPYLSLHLMISD
ILGCDRMAIIIIIIIKQDMYINMHIETITELDKFSWSCYDGSYIQIGDFGILVWNDTGSFAVDTIMVPETRVWIPDLTLY
DNSAASTLPGLKDYVATVKDNGDVKYNFPSVINSMCAIDVRYFPFDYQSCSLEFGSWASPGSGINISALKTSVDMDNYIE
NIEWSVISTKAIRKEKQYEETYPSIIFTLSLRRKPLFYMMNMIFPCLLITFVAVFGFMLPPDSGEKVNLEVTVLLSLAVF
QLIVLDLIPASGDSTPFIGIYFMTSMVLVGMSCLMTVIVLQIHFRGCNSRQISPWIYKRIMIPLAKITFVQLQPDTLLDR
QQSLITRKMSIRPNKIYMNGTSSDTFVEHSERHPFLPDMKEIISLVNKITANVDAITQVVCDSDEGDVIKLQWSILATIF
DRLFLAVYITVSVITTLSILLQFQGAQ

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