Gene
| Gene Model ID | pfu_aug1.0_6.1_57882 |
|---|---|
| Locus | scaffold6.1 : 86746 ... 101613 : + |
| To GenomeBrowser | scaffold6.1:86746..101613 |
| Genes list of scaffold | scaffold6.1 |
| Synonym | pfu_aug2.0_486.1_20830 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6.1_57882.t1 | 2 | 1 | UPF1_Zn_bind | 101 | 252 | 0.0 | 248.8 | 0.0 | 0.0 | 248.6 |
| pfu_aug1.0_6.1_57882.t1 | 1 | 1 | AAA_11 | 417 | 619 | 0.0 | 182.3 | 0.0 | 0.0 | 181.5 |
| pfu_aug1.0_6.1_57882.t1 | 1 | 1 | ResIII | 417 | 552 | 1.5e-07 | 31.4 | 4.6e-10 | 3.3e-07 | 30.3 |
| pfu_aug1.0_6.1_57882.t1 | 1 | 1 | AAA_30 | 418 | 616 | 9.1e-12 | 44.9 | 7.1e-13 | 5.0e-10 | 39.2 |
| pfu_aug1.0_6.1_57882.t1 | 1 | 1 | AAA_19 | 425 | 481 | 3.4e-14 | 52.3 | 1.1e-16 | 7.9e-14 | 51.1 |
| pfu_aug1.0_6.1_57882.t1 | 2 | 2 | UPF1_Zn_bind | 448 | 475 | 0.0 | 248.8 | 0.8 | 560.0 | 0.0 |
| pfu_aug1.0_6.1_57882.t1 | 1 | 1 | AAA_12 | 627 | 823 | 0.0 | 204.5 | 0.0 | 0.0 | 203.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6.1_57882.t1 | gi|148223321|ref|NP_001085862.1| | MGC80941 protein [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6.1_57882.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57882.t1 atgagtgtggacgcatatgcaccgaactcccaaacgttgacgttccttgacaccgaggacgatttgatcggtgctgacac acaaggaactgaatttgattttaccgattttactctaccatctcagactcaatctcaaactcaagcatctcagattgagc caggaacaaaccaggttaatggaccagaggtacctgttcaaaatggattggatcacattactacagttacccaggctgtg gctgagctccagtttgaggaggaagaagaagaacaatttatgatgaaagatttacctaaacatgcttgctcttattgtgg aattcatgatccggcatgtgtggtgttctgtaattctacaaagaagtggttctgtaatggcagggggaatacatccggaa gccatatcatcaatcatctggtgagggccaaagccaaggaagtgactttacacaaggatggtcccctgggagagactgtc ttggaatgctacaactgtggatgtaggaacgtgttcttgttgggctttattccagccaaggcagattctgtggtcgtgtt actgtgccgtcaaccttgtgcaactctgacaaacctgaaggatatgaattgggaccctacacagtggcagccattgatcc aggacagacagttcttaccttggttagtaaaggtcccctctgaccaggagcagctgaggagtcgtcagatctccgcccag cagatcaacaaactggaggagctatggaaggacaaccctgaggccacactggaggatctggaaaaaccaggggtggatga ggagccacaacaagtccttctcagatatgatgatgcctatcagtaccagaatatttttggaccacttgtaaagcttgagg cagattatgacaagaaacttaaggaatcccagacccaggataacatcgtggtcagatgggacgtaggactgaacaagaag aggatagcatactttcaccttcctaaagctaatgatgaccatagcgatgaagtagccatagagctgaagagtaatgcagg agtaccagttgaatgtactcacaactttgttgttgactttgtgtggaaatcaacatcatttgatagaatgcaagcagccc tgaaaacatttgcggttgatgagacatcagtatgggggtacatctaccacaaactcctcgggcacgaggtggaggatgta gtcattaagtgtcagctaccaaagcgatttagtgtccccaatctaccagaactgaaccattcacaggtgtatgctgttaa gactgtactacagaggcctctcagtcttattcagggtcccccaggaacaggtaagactgtgacatcagcgaccatagtgt accacctggccaaacagaataacggtcaagttcttgtgtgtgctccatctaacatcgctgtcgaccagcttacagagaaa atacacaagactggactcaaggttgtacgtttgtgtgctaagagcagagaagctattgattctcctgtgtccttcctggc tctacataatcagatcagaaacatggaaagtgtaccagaactacaaaagcttcagcaactgaaagatgagactggcgagc tctcatctactgatgaaaaacgttatagatccctgaagaagcagtgtgagagggaactgctacagcatgcggacgttatt tgctgtacatgtgtgggtacaggtgaccccagactggccaaaatgcagttccgttctgtactgattgacgagagcactca ggccacagaaccagagtgtatgattcctgtaattcttggttgtagacagttgatattggtgggagatcactgccagctgg gccctgtggttatgtgtaagaaagctgcccgggctgggctatctcagtcactgtttgaacgtctagttgtactggggatt cgccctatacgcctgcaggtccagtacagaatgcacccatctctcagtgcatttccttctaacatcttctatgaaggctc cttacagaatggtgtctctccagctgacagaagcagaaagaaccttgacataccatggcctcaggcagataaacctatgt ttttctacactacatcaggacaagaggagatatctagttcaggaacatcctaccttaatagaactgaggcagccaatgtt gaaaagatcgctacaaggttcctacgatccaatgtcaaacccgagcagattggtatcatcacaccttacgagggccagag agcctacattgtccagtacatgcagtacagtggatcgcttaacaagaagctctatcaggagattgaagttgcaagtgtgg atgcttttcaaggaagagagaaggattttattattctctcatgtgtacgatccaatgaacatcaaggaattggtttccta aatgatccaagacgtctgaatgtggcacttactagagcgaaatacggaataatcattgtagggaatcccaaagttctatc aaagcaacctctatggaaccatcttttgacatactacaaagaacagaaatgtcttgtggagggacctctaaacaacttga aggaaagcatgattcagttcagcaagcctaggaaacttgtcaactcaaccaaccctggtggtagatttatgagtaacatt atgtttgatgccagagaagtattgattccaggcagcgtttatgatagaaaccgttcctacaatgagccggtagtgaggac ccatgatcagctgagttacataggcccagagagagcctactcgggcccagccttgaacatcccagtacccgtcaatatgt tcataccacccatgcctccaacattcaatggtcatcaaccagtaaatatgggtggaagaggaatgcccaatgcacgtgga ggtcgtgggggcagaggtcgtcaaggtcgtcctcctcggtacagcagcactcagtcacagggcatgtcacagagtcagat gtcccagagccagggaagccaggatatctctcagcccttctctcaaggccctctcacacagggtcatatgtcgatgagtc agcccttcaacatgagtcaacctgggctgtctgggctctcccagccagagctgtcacaagacagcttcttggtggatgac ttcaaatcacaggcagatgccatgttgtcacaggactccacctaccaaggcgatagaatgttctacgcttcacaactatc acagggtccgtttaattag |
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Protein
| Protein ID | pfu_aug1.0_6.1_57882.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57882.t1 MSVDAYAPNSQTLTFLDTEDDLIGADTQGTEFDFTDFTLPSQTQSQTQASQIEPGTNQVNGPEVPVQNGLDHITTVTQAV AELQFEEEEEEQFMMKDLPKHACSYCGIHDPACVVFCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETV LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCATLTNLKDMNWDPTQWQPLIQDRQFLPWLVKVPSDQEQLRSRQISAQ QINKLEELWKDNPEATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEADYDKKLKESQTQDNIVVRWDVGLNKK RIAYFHLPKANDDHSDEVAIELKSNAGVPVECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSVWGYIYHKLLGHEVEDV VIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAKQNNGQVLVCAPSNIAVDQLTEK IHKTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCERELLQHADVI CCTCVGTGDPRLAKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGI RPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVSPADRSRKNLDIPWPQADKPMFFYTTSGQEEISSSGTSYLNRTEAANV EKIATRFLRSNVKPEQIGIITPYEGQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFL NDPRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPRKLVNSTNPGGRFMSNI MFDAREVLIPGSVYDRNRSYNEPVVRTHDQLSYIGPERAYSGPALNIPVPVNMFIPPMPPTFNGHQPVNMGGRGMPNARG GRGGRGRQGRPPRYSSTQSQGMSQSQMSQSQGSQDISQPFSQGPLTQGHMSMSQPFNMSQPGLSGLSQPELSQDSFLVDD FKSQADAMLSQDSTYQGDRMFYASQLSQGPFN |
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