Gene
| Gene Model ID | pfu_aug1.0_6.1_57884 |
|---|---|
| Locus | scaffold6.1 : 116276 ... 123618 : + |
| To GenomeBrowser | scaffold6.1:116276..123618 |
| Genes list of scaffold | scaffold6.1 |
| Synonym | pfu_aug2.0_486.1_20829 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6.1_57884.t1 | 2 | 1 | Orn_Arg_deC_N | 16 | 226 | 9.80909e-45 | 152.7 | 0.0 | 1.69978e-42 | 145.3 |
| pfu_aug1.0_6.1_57884.t1 | 1 | 1 | Ala_racemase_N | 51 | 192 | 1.7e-07 | 31.0 | 1.9e-10 | 5.7e-07 | 29.3 |
| pfu_aug1.0_6.1_57884.t1 | 2 | 1 | Orn_DAP_Arg_deC | 137 | 162 | 3.5e-17 | 62.1 | 0.39 | 1200.0 | -0.8 |
| pfu_aug1.0_6.1_57884.t1 | 2 | 2 | Orn_Arg_deC_N | 279 | 306 | 9.80909e-45 | 152.7 | 0.0031 | 9.2 | 5.3 |
| pfu_aug1.0_6.1_57884.t1 | 2 | 2 | Orn_DAP_Arg_deC | 313 | 418 | 3.5e-17 | 62.1 | 4.5e-20 | 1.3e-16 | 60.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6.1_57884.t1 | gi|260797946|ref|XP_002593961.1| | hypothetical protein BRAFLDRAFT_118823 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6.1_57884.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57884.t1 atgaccaacaactttaacctcagggtaagcaccattatcattgaggcgaatgcaaatccacacatcatgcgtattttcaa ggagagtggactttctttgacgttagtaagtggaatggagcttcggtttgccttggaatgtggcttcaacccaaagacac tagtctttaacggaaatggaaagcttgatgaagaaatcgctttggcattaaagcacgatgtgttacttaacatcgattct cttttcaacatgaagcaaacgttaaggatatgcagaaaaactggtcataaagccagacttttgttaaggatcaatccagg aataaacccggatgtccatagatatgtcagcactggtcaggaggggtccaaatttggactgttctcagaggagttacaag aagtcatagaggcagcttctgattccaaagaggtagaagtagtgggtttgcactgtcaccttgggtcaactattaagaaa acggaaataatcagaaatagcgtaagagttctgaagcatatatggaaagaaatgaaggaaaaggggttttgcagtctaca atatcttaacataggcggcgggctaggaattgactatcataaattggtagacaggaccaaaccgttccgttgtctagatg attcacttcgagctgaaataaaagatgtagaaagtcacgtatcgtcagatcatcggttaaagacaattttgcacgaattc attaatgagaggtgcacaacagcagactttgaatgtcatttgcaacataacaaagaggaaaagttagcagaaattaaaga tgccctatcgcatggaaaggtccaagtaccgtctgcccgtgatctggtggagtccgtggtagacttactggaggaggaca tgacactagtcctagaacctgggcggtccctgatagctgatgcttgtatattatattctacagtgttaggatgtaagaaa agtggagacaagagatatatggtcattgacgggtctatgacggaggtgatccgcccttgcctgtacgatgcataccatca catagatttagcctgtcctagtcagcacgaagatacccaaaagtttgtgtttgacgtggtgggaccagtgtgtgaaagtg cagatttccttgggaagaatcgtttgatgtcaacccctcatcctggttgtggagtagcaatatttgatgtaggtgcttat tgtgggagtatggcctccaactacaacctcagaattcgcccagcagaaatacttatcagtggtagttcctcgcgtcttat caggaaacctgacacatatgaagacttaatgagaccatatgacccaatctga |
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Protein
| Protein ID | pfu_aug1.0_6.1_57884.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57884.t1 MTNNFNLRVSTIIIEANANPHIMRIFKESGLSLTLVSGMELRFALECGFNPKTLVFNGNGKLDEEIALALKHDVLLNIDS LFNMKQTLRICRKTGHKARLLLRINPGINPDVHRYVSTGQEGSKFGLFSEELQEVIEAASDSKEVEVVGLHCHLGSTIKK TEIIRNSVRVLKHIWKEMKEKGFCSLQYLNIGGGLGIDYHKLVDRTKPFRCLDDSLRAEIKDVESHVSSDHRLKTILHEF INERCTTADFECHLQHNKEEKLAEIKDALSHGKVQVPSARDLVESVVDLLEEDMTLVLEPGRSLIADACILYSTVLGCKK SGDKRYMVIDGSMTEVIRPCLYDAYHHIDLACPSQHEDTQKFVFDVVGPVCESADFLGKNRLMSTPHPGCGVAIFDVGAY CGSMASNYNLRIRPAEILISGSSSRLIRKPDTYEDLMRPYDPI |
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