Gene
| Gene Model ID | pfu_aug1.0_6.1_57885 |
|---|---|
| Locus | scaffold6.1 : 123994 ... 127475 : - |
| To GenomeBrowser | scaffold6.1:123994..127475 |
| Genes list of scaffold | scaffold6.1 |
| Synonym | pfu_aug2.0_486.1_20828 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | matrilin like protein |
| Description | matrilin like protein, best hit to BLAST XP_002595180.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6.1_57885.t1 | 2 | 1 | VWA_CoxE | 16 | 156 | 7.4e-09 | 35.0 | 1.7e-05 | 0.036 | 13.2 |
| pfu_aug1.0_6.1_57885.t1 | 3 | 1 | VWA | 20 | 197 | 0.0 | 287.7 | 1.4013e-45 | 1.60028e-42 | 145.2 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 1 | VWA_2 | 20 | 196 | 5.8e-32 | 111.1 | 4.5e-20 | 9.6e-17 | 61.6 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 1 | VWA_3 | 20 | 173 | 8.3e-14 | 51.5 | 2.2e-09 | 4.7e-06 | 26.3 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 1 | vWA-TerF-like | 21 | 161 | 2.7e-10 | 40.4 | 4.7e-06 | 0.0099 | 15.7 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 2 | VWA_CoxE | 256 | 378 | 7.4e-09 | 35.0 | 2.9e-07 | 0.00062 | 18.9 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 2 | vWA-TerF-like | 258 | 400 | 2.7e-10 | 40.4 | 4.2e-08 | 8.8e-05 | 22.4 |
| pfu_aug1.0_6.1_57885.t1 | 3 | 2 | VWA | 259 | 435 | 0.0 | 287.7 | 1.3999e-42 | 3.0e-39 | 134.5 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 2 | VWA_2 | 259 | 431 | 5.8e-32 | 111.1 | 5.7e-16 | 1.2e-12 | 48.2 |
| pfu_aug1.0_6.1_57885.t1 | 2 | 2 | VWA_3 | 259 | 416 | 8.3e-14 | 51.5 | 4.6e-08 | 9.7e-05 | 22.1 |
| pfu_aug1.0_6.1_57885.t1 | 3 | 3 | VWA | 525 | 586 | 0.0 | 287.7 | 2.5e-05 | 0.053 | 13.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6.1_57885.t1 | gi|301626452|ref|XP_002942405.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6.1_57885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57885.t1 atgatgacaaattctcatagtaaaccagtaagtggtccctgtccaaaccagcccgttgatatagtatttgtactggattc aagctcgagcatctggccacccgattacttcagacagattggattcatagagaatattacaagccagtttaatgtaggac cgttagccaaccaaacacgtattggtatagtcttattcagtgactatgcaaaaatagcattcaatctgggtgataattta gagaaaagggaaacaatttctgccataagaagaataaactacctttctggaggaacgaatactgccgaagcacttgacct gctgtctacgaccatgttttcaggcgaaaatggcgggaggaatcacgttcctcatgtggccgttgttgtcacggacggtg aaagtcacgatacttctgccaccgctcaagctgcaaagagagcacgtgacaatggcacaaagctattagctattggtgtt ggtccaggagcagatgagagggaactgaaattaatagccagtgacccagacgacaaacatgtcttcaaagtcaccaacta taggaccttgcaagaaatcgtcgagtccatgataaacagaacttgtgaagttttaaaaacaacagttactccagtaaaga tagccagcacgtcaacaagtgtaaccagtacaccagttagcacacagagcacacctgtcaacaaaagtgattcgacgcta gatattcagaatgatatcaacaacataattaagtactgtggaggtaagcctgctgatgtttatttcctgctggactcgtc cagtagcatccatcagtcagaattcaagaaggaagtggattttgtgaaagagcttgttgatatatttgagataggacaaa atgcaacccgagtaggtgtttcaacatttagtgacaaataccaagaagtcatccatttcggcgaccatgatgagaaggcg actttattgacggcgttagaccaagttccatacttaggtggaggaacggacacagcgaatgccatcagacgtgttagaac ggaagaattcaccactgactcggcaagaagagaggtagcccatatactgatagtcatgacagatggtctctcacgtgatc ccttcggtaccgctcaggaagcaaaacttgccaaggagaccggcatgtatatttttgctataggaatcggtcagagtgtc gacagagtagagttgaactcgatagcaagtccaagtgacggtaacatcaaggattacgtcttcaatgtaacaaacttcga ggcactccgggacatcaggaacctccttgcaataaaaacgtgcgatgtagcagcagtccaaagggatcaagaagcatgca gaattaacggacctgtcgatgttatatttgcttttgactccgcaagtctgggtagttatggtaccaacgaggtgtttaca gtcgtgttgaacctttctcattcttttacaactccaaatgatgtcaaaattggagtagtttcacagtcatgtacaagaag tgtcgatatgtccttgtcaagcaccgttacaaccaccagttttggatcttctaacggattggcattcattgtacgacgct tgcgaaccacaggatttctacaacaaaatggtggtcgctcaaatgcaaggaagatagcaatagtattcattgacaatgta ccaacaagggctttggacaatgaaattctcaaaactgcttccgccgttgacgaaatcattgccgtttccatcggcaaaaa cctacgttctcatgcctttggaaattcctattcaaaggttgtgtcggttgaatcaatatctgaacttccatcaatgttct ctcctttactgcgatttatttgtaagatatag |
|
Protein
| Protein ID | pfu_aug1.0_6.1_57885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57885.t1 MMTNSHSKPVSGPCPNQPVDIVFVLDSSSSIWPPDYFRQIGFIENITSQFNVGPLANQTRIGIVLFSDYAKIAFNLGDNL EKRETISAIRRINYLSGGTNTAEALDLLSTTMFSGENGGRNHVPHVAVVVTDGESHDTSATAQAAKRARDNGTKLLAIGV GPGADERELKLIASDPDDKHVFKVTNYRTLQEIVESMINRTCEVLKTTVTPVKIASTSTSVTSTPVSTQSTPVNKSDSTL DIQNDINNIIKYCGGKPADVYFLLDSSSSIHQSEFKKEVDFVKELVDIFEIGQNATRVGVSTFSDKYQEVIHFGDHDEKA TLLTALDQVPYLGGGTDTANAIRRVRTEEFTTDSARREVAHILIVMTDGLSRDPFGTAQEAKLAKETGMYIFAIGIGQSV DRVELNSIASPSDGNIKDYVFNVTNFEALRDIRNLLAIKTCDVAAVQRDQEACRINGPVDVIFAFDSASLGSYGTNEVFT VVLNLSHSFTTPNDVKIGVVSQSCTRSVDMSLSSTVTTTSFGSSNGLAFIVRRLRTTGFLQQNGGRSNARKIAIVFIDNV PTRALDNEILKTASAVDEIIAVSIGKNLRSHAFGNSYSKVVSVESISELPSMFSPLLRFICKI |
|