Gene
| Gene Model ID | pfu_aug1.0_6.1_57888 |
|---|---|
| Locus | scaffold6.1 : 144028 ... 150085 : - |
| To GenomeBrowser | scaffold6.1:144028..150085 |
| Genes list of scaffold | scaffold6.1 |
| Synonym | pfu_aug2.0_486.1_20826 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6.1_57888.t1 | 1 | 1 | RNA_GG_bind | 241 | 324 | 4.6e-26 | 90.3 | 7.4e-30 | 1.1e-25 | 89.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6.1_57888.t1 | gi|253314458|ref|NP_064380.3| | phosphorylated adapter RNA export protein isoform 1 [Mus musculus] | 2.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6.1_57888.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57888.t1 atgtcagaggtggaatcctctgtgagccaagctgttacaatggctatcccaagagtctctgctgcacctccagctacctc tacacagccatcgtcatatgacagcagaaatagtacagtattcaggaatgtaccaaggcaccattcatctagtgacgaat ccagtgattccctcagtgatgaagatacagatttatggaggtgtaaaaaggctaaatatttttcttcctccaaaagggaa gattctatggttactgaactgccagatgaaatcaaatctccaccgcgtaataacggattttcaaaattcgtacagccgag tggttcagtgaaacgtaagatcaacaatgtctggggatctgtcttaactgagcaatgcttgactgaaaatatgaaaagtg tggaagtgtataaaaatccagaactagtgaatagtgacagaaaagtagagaaatatgacttcactaatgcatacgatgat gacaggccggatgccatcgatatcttccccaaaacaactaacgatccctttgaaaatgtaatagcatctgaccatgaggg agattacttatctcatagacaaggtacaaagagaaagaggaaggcgaaagatagaattggaagaagacatgttaaggaca gattgaacgattacccaccagttaaaactctcagtgaaatcagtgacgagcctgtaactgtagaagacagtgaacaagac attgttagttacatagctaaagaattgtttgaacgtaaagtggaattaattgcaaaaattgtccgagttgtcggtaagga aaaagccttagaggttttcgaagaagtgttgaagatagaggaaaatggaggcatgcttaccaatgatggttttagaagga gggccccaggaggagtttacttcactctaatgaaaacagataaaggccttactgcagagcagcatgatgagatatttgcc gaggaggaaagaaattataaggaatggtgcaaaaaggcaaagaaagaaagaagaaacaaagcacggaagatgaaaagaat gtacaagaaattacctcagtcaaagttattagagacaggacataaaaatgacgaatgcagtactagcaacaggaaaggtg aagatgatatgaactctgataattctagcggagaagacgacggcaatatggatttaatggacagtgtgaatgacagacaa acaaacaaaggtgctatgattacggacataggcaaggaggaatccggggctgatatcatagatttaggactcgatgaggg ggagataatagattaa |
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Protein
| Protein ID | pfu_aug1.0_6.1_57888.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6.1_57888.t1 MSEVESSVSQAVTMAIPRVSAAPPATSTQPSSYDSRNSTVFRNVPRHHSSSDESSDSLSDEDTDLWRCKKAKYFSSSKRE DSMVTELPDEIKSPPRNNGFSKFVQPSGSVKRKINNVWGSVLTEQCLTENMKSVEVYKNPELVNSDRKVEKYDFTNAYDD DRPDAIDIFPKTTNDPFENVIASDHEGDYLSHRQGTKRKRKAKDRIGRRHVKDRLNDYPPVKTLSEISDEPVTVEDSEQD IVSYIAKELFERKVELIAKIVRVVGKEKALEVFEEVLKIEENGGMLTNDGFRRRAPGGVYFTLMKTDKGLTAEQHDEIFA EEERNYKEWCKKAKKERRNKARKMKRMYKKLPQSKLLETGHKNDECSTSNRKGEDDMNSDNSSGEDDGNMDLMDSVNDRQ TNKGAMITDIGKEESGADIIDLGLDEGEIID |
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