Gene
| Gene Model ID | pfu_aug1.0_60.1_29054 |
|---|---|
| Locus | scaffold60.1 : 48765 ... 56735 : - |
| To GenomeBrowser | scaffold60.1:48765..56735 |
| Genes list of scaffold | scaffold60.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Nk2.1 protein |
| Description | NCBI BLASTP hit to CAJ38809.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_60.1_29054.t1 | 1 | 1 | Homeobox | 157 | 213 | 6.9e-21 | 73.6 | 8.0e-25 | 1.2e-20 | 72.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_60.1_29054.t1 | gi|83318943|emb|CAJ38809.1| | Nk2.1 protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_60.1_29054.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29054.t1 atgtccctcagtcctaagcataccacaccattctcagtaactgacattctaagtccaatcgaggagacgtacaagcggac aactattgaggccagcatcccgcctctggctccgtacaggaaccacacacagtaccacggaacggctcagatggcaagca tgagtgtacctgctacaaatccctaccatacgggctatgtcccgcccctctcacaccatactccgtcttacacctcacaa ttctgcaatggaactgactttgggcattatggagacccatccagacacacttcaacaaactggtacagcgcaaatccgga tccgaggattgcaatatctcgattgatgggaggaccgagttcctgtgccatgtctaccatgtccccggggatgcagcata tgaacatgtccctggggggactggaccacaacaaagcaggtggaattcagttcccaattactcagcgcagaaaaagacgc gtcctattttctcaagcgcaagtttatgaattagaaagacgcttcaagcagcaaaaatatctctccgctccagagcgtga acatttagctagcatgattaatcttactcctacacaagttaaaatttggttccagaaccatcgttacaagtgtaagcgcc aacagaaagacaaagaaaagatggattcctcgtcccctgtgtcgtccccggggtctgaggaacaggaatcccccagacaa acttcacataactctacaagtcagcaaaaccaaacgtcaccaagacgcgttggagtttctgttcttgttaaagacgggaa accttgttcaggttcaacttccggcgatgtacctacatccgccgcatcgtctcagaatcaacaaacaagtgcgcagtctc gacttggatcgtctcagcaggacacatctcatgtctcatctcaaggaccaaataaacatctctcctcacattcaagttcg ctcggaaatggatctatttctacgcaaagtgctacaaactcacacgaggcatattctgctcatagcggaggaatacacgc tggacttcagtatcactccgcgagcatgaacggaagtttgtcctctccttatggtagagcttggttaaaaccggaagctg acttttatcattag |
|
Protein
| Protein ID | pfu_aug1.0_60.1_29054.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29054.t1 MSLSPKHTTPFSVTDILSPIEETYKRTTIEASIPPLAPYRNHTQYHGTAQMASMSVPATNPYHTGYVPPLSHHTPSYTSQ FCNGTDFGHYGDPSRHTSTNWYSANPDPRIAISRLMGGPSSCAMSTMSPGMQHMNMSLGGLDHNKAGGIQFPITQRRKRR VLFSQAQVYELERRFKQQKYLSAPEREHLASMINLTPTQVKIWFQNHRYKCKRQQKDKEKMDSSSPVSSPGSEEQESPRQ TSHNSTSQQNQTSPRRVGVSVLVKDGKPCSGSTSGDVPTSAASSQNQQTSAQSRLGSSQQDTSHVSSQGPNKHLSSHSSS LGNGSISTQSATNSHEAYSAHSGGIHAGLQYHSASMNGSLSSPYGRAWLKPEADFYH |
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