Gene
Gene Model ID | pfu_aug1.0_60.1_29056 |
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Locus | scaffold60.1 : 80188 ... 111805 : - |
To GenomeBrowser | scaffold60.1:80188..111805 |
Genes list of scaffold | scaffold60.1 |
Synonym | pfu_aug2.0_1445.1_18336 |
Manual annotation
Study field | Biomineralization |
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Gene name | 5'-3' exoribonuclease 2 |
Description | NCBI BLASTP hit to XP_001373979.1 |
mRNA evidence |
Study field | other |
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Gene name | 5'-3' exoribonuclease 2 |
Description | NCBI BLASTP hit to XP_001373979.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_60.1_29056.t2 | 1 | 1 | XRN_N | 1 | 256 | 0.0 | 375.2 | 0.0 | 0.0 | 374.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_60.1_29056.t2 | gi|126303629|ref|XP_001373979.1| | PREDICTED: 5'-3' exoribonuclease 2 [Monodelphis domestica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
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>Embryonic/Larval stages | |
mix | 2 |
mix | 3 |
egg-4cell | 2 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 2 |
mantle | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_60.1_29056.t1 |
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Definition | - |
>pfu_aug1.0_60.1_29056.t1 atgggagtaccggcgttctttcgatggttgagtaagaaatatccgtcgattctagtacactgtgtagaagagaaggcaaa ggaagtagatggtgtacagatcccagtggataccagtttacctaatccaaatgactacgagtttgataacttgtatcttg atatgaatggtattatccatccttgttgtcacccggaggataaaccagcacctaagaatgaagatgagatgatggttttg atctttgagttcatagacagaatattttctattgtacgacccaggaaggttttatacatggccattgatggagtggcacc gagagctaagatgaaccagcagagatccaggagattcagagcatcaaaagaaagcaaagagaatatagaggagatggcta gattgagggaggagctgtcagctaaaggctatcacttacccccagaaaaacctaaggaggaacactttgatagtaactgt attactcctggaaccccgttcatgtttcgcttggcagactgtctacgctattacatacatgacagattaaataatgaccc aggctggcaaaacgtcaaagtcattctgtctgatgcaaatgtaccgggggaaggtgaacataaaataatggactatatca gaagacaacgagctcagccagaccatgatgctaacacacggcattgtttatgtggagccgatgctgatttgatcatgtta gggttagccacccacgagccaaatttcacaattatcagagaggagtttgttcctaacaagccaagaccatgtaatctttg tggacaagttggtcatgaaatgaaagaatgtacaggtttacctaaagatatgtgtggagagcatgatgagctgccaaaat taatgggagaagagcaaaagttcatatttctcaggttaaatattttgagagaatatttagaaagagaattacgaatggac aatctaccgttcaaatacgattttgagagagctctagatgactgggtttttatgtgcttctttgtgggtaatgattttct cccacatttgccatcattagaaatccgtgaaggtgccatagacagattggttagactgtacaaagatgctgtcagaaaaa ctgggggtttcctgacaaacagtggtgttgtgaatttagagagagtccagttagtaatgagtgatttaggaaaagtagag gatgaaattttcaaaagaaggagagatacagagcttgaatttagaagacgggataaagaaaagaaaagaagggcaaagag aactcgagatggtgatggtaatcaaaggggcgtcaaaaggaaatcagatggagacgggcagaggggtcgggaacaagagg aagaggaggaggaagagaaggagcctgatgatgaagtcaggttatgggaagatggctggaaggacagatattacaagtca aagtttggtgtagatgtaacagatatagacttcagacacactgtagccaaccactatgtacgaggtctgtgctgggttct cagatattactaccagggctgtgcttcatggaagtggtactttccttatcactacgcaccatttgcctcagattttgtta atatcgggcagctatctaacgactttgaaaagaagaccacaccttttaagccattagaacagttaatgggtgtgttccca gcagccagtaagaaacatctaccagtcacatggcagaggctgatgtgtgatccagagtctcccatcatagatttttatcc tgtggattttaaaatagatctgaatggaaagaaatatgcatggcaaggagttgctttattaccgtttgttgatgagaaga ggctgctggcggccttggaaaatgtttatcctgatctcacaccgggagaacaggagaggaatatatggggagatgacaga ctatttgttggtattagacaccctgcatacagcttttttgaaggtctatatgagggaagtcaagtcacagagggagtaga tgtagatacaaagctgagccagggtatgggtggtttggtatggtgtgataatagggctgtaatgacaggagatacagtgc cttcacctttaccagcattacaaggtattccagataacagagctatatgtgtaaagttcaaggatcctcagtttgatcct gatttcctgttcgaggcaaaggtcctaccaacggctgtaatgccagacagagtattgaagccggaggattttaacagacg taatcctggtcagcattggatgccgcagcttggaatgtcacgacaaagtggatatcagcaaaacaaggatatgggatcgg caatcaggatggtcagacatggtataggatcaggaggtggaggtcagtttggcaatgtgcctcctcccaactacaaccaa ggaggaggaggaggaggaaggcaaagtatgtaccaaaatcactgtaaccctagtgtacctgtacccagagtctggtgtgg aaatcaatatggtggatatggtaacaatcagcagcagtatgataatagagggaggaaccatggaggttctgggaatatgg gttggcaaagcaatatgagaggacagcaaaacgcctacaacagcaatcaacaaagaggttatggcggaaatcagggaggt tatggcgggaatcaaggaggttacgggggcaaccaaggaggttatggatggaatcagggcggatatggcggtaaccgtgc ttacggaggtaatcaaggaggaggttatggcgggaaccagggaggttatggaggtaaccaaggcaactacaggggaggta acaagtacggaggtaatcaaggcggatacaacagacagaggtactag |
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Transcript ID | pfu_aug1.0_60.1_29056.t2 |
Definition | - |
>pfu_aug1.0_60.1_29056.t2 atgggagtaccggcgttctttcgatggttgagtaagaaatatccgtcgattctagtacactgtgtagaagagaaggcaaa ggaagtagatggtgtacagatcccagtggataccagtttacctaatccaaatgactacgagtttgataacttgtatcttg atatgaatggtattatccatccttgttgtcacccggaggataaaccagcacctaagaatgaagatgagatgatggttttg atctttgagttcatagacagaatattttctattgtacgacccaggaaggttttatacatggccattgatggagtggcacc gagagctaagatgaaccagcagagatccaggagattcagagcatcaaaagaaagcaaagagaatatagaggagatggcta gattgagggaggagctgtcagctaaaggctatcacttacccccagaaaaacctaaggaggaacactttgatagtaactgt attactcctggaaccccgttcatgtttcgcttggcagactgtctacgctattacatacatgacagattaaataatgaccc aggctggcaaaacgtcaaagtcattctgtctgatgcaaatgtaccgggggaaggtgaacataaaataatggactatatca gaagacaacgagctcagccagaccatgatgctaacacacggcattgtttatgtggagccgatgctgatttgatcatgtta gggttagccacccacgagccaaatttcacaattatcagagaggagtttgttcctaacaagccaagaccatgtaatctttg tggacaagttggtcatgaaatgaaagaatgtacaggtttacctaaagatatgtgtggagagcatgatgagctgccaaaat taatgggagaagagcaaaagttcatatttctcaggttaaatattttgagagaatatttagaaagagaattacgaatggac aatctaccgttcaaatacgattttgagagagctctagatgactgggtttttatgtgcttctttgtgggtaatgattttct cccacatttgccatcattagaaatccgtgaaggtgccatagacagattggttagactgtacaaagatgctgtcagaaaaa ctgggggtttcctgacaaacagtggtgttgtgaatttagagagagtccagttagtaatgagtgatttaggaaaagtagag gatgaaattttcaaaagaaggagagatacagagactcgagatggtgatggtaatcaaaggggcgtcaaaaggaaatcaga tggagacgggcagaggggtcgggaacaagaggaagaggaggaggaagagaaggagcctgatgatgaagtcaggttatggg aagatggctggaaggacagatattacaagtcaaagtttggtgtagatgtaacagatatagacttcagacacactgtagcc aaccactatgtacgaggtctgtgctgggttctcagatattactaccagggctgtgcttcatggaagtggtactttcctta tcactacgcaccatttgcctcagattttgttaatatcgggcagctatctaacgactttgaaaagaagaccacacctttta agccattagaacagttaatgggtgtgttcccagcagccagtaagaaacatctaccagtcacatggcagaggctgatgtgt gatccagagtctcccatcatagatttttatcctgtggattttaaaatagatctgaatggaaagaaatatgcatggcaagg agttgctttattaccgtttgttgatgagaagaggctgctggcggccttggaaaatgtttatcctgatctcacaccgggag aacaggagaggaatatatggggagatgacagactatttgttggtattagacaccctgcatacagcttttttgaaggtcta tatgagggaagtcaagtcacagagggagtagatgtagatacaaagctgagccagggtatgggtggtttggtatggtgtga taatagggctgtaatgacaggagatacagtgccttcacctttaccagcattacaaggtattccagataacagagctatat gtgtaaagttcaaggatcctcagtttgatcctgatttcctgttcgaggcaaaggtcctaccaacggctgtaatgccagac agagtattgaagccggaggattttaacagacgtaatcctggtcagcattggatgccgcagcttggaatgtcacgacaaag tggatatcagcaaaacaaggatatgggatcggcaatcaggatggtcagacatggtataggatcaggaggtggaggtcagt ttggcaatgtgcctcctcccaactacaaccaaggaggaggaggaggaggaaggcaaagtatgtaccaaaatcactgtaac cctagtgtacctgtacccagagtctggtgtggaaatcaatatggtggatatggtaacaatcagcagcagtatgataatag agggaggaaccatggaggttctgggaatatgggttggcaaagcaatatgagaggacagcaaaacgcctacaacagcaatc aacaaagaggttatggcggaaatcagggaggttatggcgggaatcaaggaggttacgggggcaaccaaggaggttatgga tggaatcagggcggatatggcggtaaccgtgcttacggaggtaatcaaggaggaggttatggcgggaaccagggaggtta tggaggtaaccaaggcaactacaggggaggtaacaagtacggaggtaatcaaggcggatacaacagacagaggtactag |
Protein
Protein ID | pfu_aug1.0_60.1_29056.t1 |
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Definition | - |
>pfu_aug1.0_60.1_29056.t1 MGVPAFFRWLSKKYPSILVHCVEEKAKEVDGVQIPVDTSLPNPNDYEFDNLYLDMNGIIHPCCHPEDKPAPKNEDEMMVL IFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKESKENIEEMARLREELSAKGYHLPPEKPKEEHFDSNC ITPGTPFMFRLADCLRYYIHDRLNNDPGWQNVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDANTRHCLCGADADLIML GLATHEPNFTIIREEFVPNKPRPCNLCGQVGHEMKECTGLPKDMCGEHDELPKLMGEEQKFIFLRLNILREYLERELRMD NLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVRLYKDAVRKTGGFLTNSGVVNLERVQLVMSDLGKVE DEIFKRRRDTELEFRRRDKEKKRRAKRTRDGDGNQRGVKRKSDGDGQRGREQEEEEEEEKEPDDEVRLWEDGWKDRYYKS KFGVDVTDIDFRHTVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNDFEKKTTPFKPLEQLMGVFP AASKKHLPVTWQRLMCDPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLAALENVYPDLTPGEQERNIWGDDR LFVGIRHPAYSFFEGLYEGSQVTEGVDVDTKLSQGMGGLVWCDNRAVMTGDTVPSPLPALQGIPDNRAICVKFKDPQFDP DFLFEAKVLPTAVMPDRVLKPEDFNRRNPGQHWMPQLGMSRQSGYQQNKDMGSAIRMVRHGIGSGGGGQFGNVPPPNYNQ GGGGGGRQSMYQNHCNPSVPVPRVWCGNQYGGYGNNQQQYDNRGRNHGGSGNMGWQSNMRGQQNAYNSNQQRGYGGNQGG YGGNQGGYGGNQGGYGWNQGGYGGNRAYGGNQGGGYGGNQGGYGGNQGNYRGGNKYGGNQGGYNRQRY |
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Protein ID | pfu_aug1.0_60.1_29056.t2 |
Definition | - |
>pfu_aug1.0_60.1_29056.t2 MGVPAFFRWLSKKYPSILVHCVEEKAKEVDGVQIPVDTSLPNPNDYEFDNLYLDMNGIIHPCCHPEDKPAPKNEDEMMVL IFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKESKENIEEMARLREELSAKGYHLPPEKPKEEHFDSNC ITPGTPFMFRLADCLRYYIHDRLNNDPGWQNVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDANTRHCLCGADADLIML GLATHEPNFTIIREEFVPNKPRPCNLCGQVGHEMKECTGLPKDMCGEHDELPKLMGEEQKFIFLRLNILREYLERELRMD NLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVRLYKDAVRKTGGFLTNSGVVNLERVQLVMSDLGKVE DEIFKRRRDTETRDGDGNQRGVKRKSDGDGQRGREQEEEEEEEKEPDDEVRLWEDGWKDRYYKSKFGVDVTDIDFRHTVA NHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNDFEKKTTPFKPLEQLMGVFPAASKKHLPVTWQRLMC DPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLAALENVYPDLTPGEQERNIWGDDRLFVGIRHPAYSFFEGL YEGSQVTEGVDVDTKLSQGMGGLVWCDNRAVMTGDTVPSPLPALQGIPDNRAICVKFKDPQFDPDFLFEAKVLPTAVMPD RVLKPEDFNRRNPGQHWMPQLGMSRQSGYQQNKDMGSAIRMVRHGIGSGGGGQFGNVPPPNYNQGGGGGGRQSMYQNHCN PSVPVPRVWCGNQYGGYGNNQQQYDNRGRNHGGSGNMGWQSNMRGQQNAYNSNQQRGYGGNQGGYGGNQGGYGGNQGGYG WNQGGYGGNRAYGGNQGGGYGGNQGGYGGNQGNYRGGNKYGGNQGGYNRQRY |