Gene
| Gene Model ID | pfu_aug1.0_60.1_29056 |
|---|---|
| Locus | scaffold60.1 : 80188 ... 111805 : - |
| To GenomeBrowser | scaffold60.1:80188..111805 |
| Genes list of scaffold | scaffold60.1 |
| Synonym | pfu_aug2.0_1445.1_18336 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | 5'-3' exoribonuclease 2 |
| Description | NCBI BLASTP hit to XP_001373979.1 |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | 5'-3' exoribonuclease 2 |
| Description | NCBI BLASTP hit to XP_001373979.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_60.1_29056.t2 | 1 | 1 | XRN_N | 1 | 256 | 0.0 | 375.2 | 0.0 | 0.0 | 374.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_60.1_29056.t2 | gi|126303629|ref|XP_001373979.1| | PREDICTED: 5'-3' exoribonuclease 2 [Monodelphis domestica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| mix | 3 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 2 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_60.1_29056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29056.t1 atgggagtaccggcgttctttcgatggttgagtaagaaatatccgtcgattctagtacactgtgtagaagagaaggcaaa ggaagtagatggtgtacagatcccagtggataccagtttacctaatccaaatgactacgagtttgataacttgtatcttg atatgaatggtattatccatccttgttgtcacccggaggataaaccagcacctaagaatgaagatgagatgatggttttg atctttgagttcatagacagaatattttctattgtacgacccaggaaggttttatacatggccattgatggagtggcacc gagagctaagatgaaccagcagagatccaggagattcagagcatcaaaagaaagcaaagagaatatagaggagatggcta gattgagggaggagctgtcagctaaaggctatcacttacccccagaaaaacctaaggaggaacactttgatagtaactgt attactcctggaaccccgttcatgtttcgcttggcagactgtctacgctattacatacatgacagattaaataatgaccc aggctggcaaaacgtcaaagtcattctgtctgatgcaaatgtaccgggggaaggtgaacataaaataatggactatatca gaagacaacgagctcagccagaccatgatgctaacacacggcattgtttatgtggagccgatgctgatttgatcatgtta gggttagccacccacgagccaaatttcacaattatcagagaggagtttgttcctaacaagccaagaccatgtaatctttg tggacaagttggtcatgaaatgaaagaatgtacaggtttacctaaagatatgtgtggagagcatgatgagctgccaaaat taatgggagaagagcaaaagttcatatttctcaggttaaatattttgagagaatatttagaaagagaattacgaatggac aatctaccgttcaaatacgattttgagagagctctagatgactgggtttttatgtgcttctttgtgggtaatgattttct cccacatttgccatcattagaaatccgtgaaggtgccatagacagattggttagactgtacaaagatgctgtcagaaaaa ctgggggtttcctgacaaacagtggtgttgtgaatttagagagagtccagttagtaatgagtgatttaggaaaagtagag gatgaaattttcaaaagaaggagagatacagagcttgaatttagaagacgggataaagaaaagaaaagaagggcaaagag aactcgagatggtgatggtaatcaaaggggcgtcaaaaggaaatcagatggagacgggcagaggggtcgggaacaagagg aagaggaggaggaagagaaggagcctgatgatgaagtcaggttatgggaagatggctggaaggacagatattacaagtca aagtttggtgtagatgtaacagatatagacttcagacacactgtagccaaccactatgtacgaggtctgtgctgggttct cagatattactaccagggctgtgcttcatggaagtggtactttccttatcactacgcaccatttgcctcagattttgtta atatcgggcagctatctaacgactttgaaaagaagaccacaccttttaagccattagaacagttaatgggtgtgttccca gcagccagtaagaaacatctaccagtcacatggcagaggctgatgtgtgatccagagtctcccatcatagatttttatcc tgtggattttaaaatagatctgaatggaaagaaatatgcatggcaaggagttgctttattaccgtttgttgatgagaaga ggctgctggcggccttggaaaatgtttatcctgatctcacaccgggagaacaggagaggaatatatggggagatgacaga ctatttgttggtattagacaccctgcatacagcttttttgaaggtctatatgagggaagtcaagtcacagagggagtaga tgtagatacaaagctgagccagggtatgggtggtttggtatggtgtgataatagggctgtaatgacaggagatacagtgc cttcacctttaccagcattacaaggtattccagataacagagctatatgtgtaaagttcaaggatcctcagtttgatcct gatttcctgttcgaggcaaaggtcctaccaacggctgtaatgccagacagagtattgaagccggaggattttaacagacg taatcctggtcagcattggatgccgcagcttggaatgtcacgacaaagtggatatcagcaaaacaaggatatgggatcgg caatcaggatggtcagacatggtataggatcaggaggtggaggtcagtttggcaatgtgcctcctcccaactacaaccaa ggaggaggaggaggaggaaggcaaagtatgtaccaaaatcactgtaaccctagtgtacctgtacccagagtctggtgtgg aaatcaatatggtggatatggtaacaatcagcagcagtatgataatagagggaggaaccatggaggttctgggaatatgg gttggcaaagcaatatgagaggacagcaaaacgcctacaacagcaatcaacaaagaggttatggcggaaatcagggaggt tatggcgggaatcaaggaggttacgggggcaaccaaggaggttatggatggaatcagggcggatatggcggtaaccgtgc ttacggaggtaatcaaggaggaggttatggcgggaaccagggaggttatggaggtaaccaaggcaactacaggggaggta acaagtacggaggtaatcaaggcggatacaacagacagaggtactag |
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| Transcript ID | pfu_aug1.0_60.1_29056.t2 |
| Definition | - |
>pfu_aug1.0_60.1_29056.t2 atgggagtaccggcgttctttcgatggttgagtaagaaatatccgtcgattctagtacactgtgtagaagagaaggcaaa ggaagtagatggtgtacagatcccagtggataccagtttacctaatccaaatgactacgagtttgataacttgtatcttg atatgaatggtattatccatccttgttgtcacccggaggataaaccagcacctaagaatgaagatgagatgatggttttg atctttgagttcatagacagaatattttctattgtacgacccaggaaggttttatacatggccattgatggagtggcacc gagagctaagatgaaccagcagagatccaggagattcagagcatcaaaagaaagcaaagagaatatagaggagatggcta gattgagggaggagctgtcagctaaaggctatcacttacccccagaaaaacctaaggaggaacactttgatagtaactgt attactcctggaaccccgttcatgtttcgcttggcagactgtctacgctattacatacatgacagattaaataatgaccc aggctggcaaaacgtcaaagtcattctgtctgatgcaaatgtaccgggggaaggtgaacataaaataatggactatatca gaagacaacgagctcagccagaccatgatgctaacacacggcattgtttatgtggagccgatgctgatttgatcatgtta gggttagccacccacgagccaaatttcacaattatcagagaggagtttgttcctaacaagccaagaccatgtaatctttg tggacaagttggtcatgaaatgaaagaatgtacaggtttacctaaagatatgtgtggagagcatgatgagctgccaaaat taatgggagaagagcaaaagttcatatttctcaggttaaatattttgagagaatatttagaaagagaattacgaatggac aatctaccgttcaaatacgattttgagagagctctagatgactgggtttttatgtgcttctttgtgggtaatgattttct cccacatttgccatcattagaaatccgtgaaggtgccatagacagattggttagactgtacaaagatgctgtcagaaaaa ctgggggtttcctgacaaacagtggtgttgtgaatttagagagagtccagttagtaatgagtgatttaggaaaagtagag gatgaaattttcaaaagaaggagagatacagagactcgagatggtgatggtaatcaaaggggcgtcaaaaggaaatcaga tggagacgggcagaggggtcgggaacaagaggaagaggaggaggaagagaaggagcctgatgatgaagtcaggttatggg aagatggctggaaggacagatattacaagtcaaagtttggtgtagatgtaacagatatagacttcagacacactgtagcc aaccactatgtacgaggtctgtgctgggttctcagatattactaccagggctgtgcttcatggaagtggtactttcctta tcactacgcaccatttgcctcagattttgttaatatcgggcagctatctaacgactttgaaaagaagaccacacctttta agccattagaacagttaatgggtgtgttcccagcagccagtaagaaacatctaccagtcacatggcagaggctgatgtgt gatccagagtctcccatcatagatttttatcctgtggattttaaaatagatctgaatggaaagaaatatgcatggcaagg agttgctttattaccgtttgttgatgagaagaggctgctggcggccttggaaaatgtttatcctgatctcacaccgggag aacaggagaggaatatatggggagatgacagactatttgttggtattagacaccctgcatacagcttttttgaaggtcta tatgagggaagtcaagtcacagagggagtagatgtagatacaaagctgagccagggtatgggtggtttggtatggtgtga taatagggctgtaatgacaggagatacagtgccttcacctttaccagcattacaaggtattccagataacagagctatat gtgtaaagttcaaggatcctcagtttgatcctgatttcctgttcgaggcaaaggtcctaccaacggctgtaatgccagac agagtattgaagccggaggattttaacagacgtaatcctggtcagcattggatgccgcagcttggaatgtcacgacaaag tggatatcagcaaaacaaggatatgggatcggcaatcaggatggtcagacatggtataggatcaggaggtggaggtcagt ttggcaatgtgcctcctcccaactacaaccaaggaggaggaggaggaggaaggcaaagtatgtaccaaaatcactgtaac cctagtgtacctgtacccagagtctggtgtggaaatcaatatggtggatatggtaacaatcagcagcagtatgataatag agggaggaaccatggaggttctgggaatatgggttggcaaagcaatatgagaggacagcaaaacgcctacaacagcaatc aacaaagaggttatggcggaaatcagggaggttatggcgggaatcaaggaggttacgggggcaaccaaggaggttatgga tggaatcagggcggatatggcggtaaccgtgcttacggaggtaatcaaggaggaggttatggcgggaaccagggaggtta tggaggtaaccaaggcaactacaggggaggtaacaagtacggaggtaatcaaggcggatacaacagacagaggtactag |
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Protein
| Protein ID | pfu_aug1.0_60.1_29056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29056.t1 MGVPAFFRWLSKKYPSILVHCVEEKAKEVDGVQIPVDTSLPNPNDYEFDNLYLDMNGIIHPCCHPEDKPAPKNEDEMMVL IFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKESKENIEEMARLREELSAKGYHLPPEKPKEEHFDSNC ITPGTPFMFRLADCLRYYIHDRLNNDPGWQNVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDANTRHCLCGADADLIML GLATHEPNFTIIREEFVPNKPRPCNLCGQVGHEMKECTGLPKDMCGEHDELPKLMGEEQKFIFLRLNILREYLERELRMD NLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVRLYKDAVRKTGGFLTNSGVVNLERVQLVMSDLGKVE DEIFKRRRDTELEFRRRDKEKKRRAKRTRDGDGNQRGVKRKSDGDGQRGREQEEEEEEEKEPDDEVRLWEDGWKDRYYKS KFGVDVTDIDFRHTVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNDFEKKTTPFKPLEQLMGVFP AASKKHLPVTWQRLMCDPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLAALENVYPDLTPGEQERNIWGDDR LFVGIRHPAYSFFEGLYEGSQVTEGVDVDTKLSQGMGGLVWCDNRAVMTGDTVPSPLPALQGIPDNRAICVKFKDPQFDP DFLFEAKVLPTAVMPDRVLKPEDFNRRNPGQHWMPQLGMSRQSGYQQNKDMGSAIRMVRHGIGSGGGGQFGNVPPPNYNQ GGGGGGRQSMYQNHCNPSVPVPRVWCGNQYGGYGNNQQQYDNRGRNHGGSGNMGWQSNMRGQQNAYNSNQQRGYGGNQGG YGGNQGGYGGNQGGYGWNQGGYGGNRAYGGNQGGGYGGNQGGYGGNQGNYRGGNKYGGNQGGYNRQRY |
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| Protein ID | pfu_aug1.0_60.1_29056.t2 |
| Definition | - |
>pfu_aug1.0_60.1_29056.t2 MGVPAFFRWLSKKYPSILVHCVEEKAKEVDGVQIPVDTSLPNPNDYEFDNLYLDMNGIIHPCCHPEDKPAPKNEDEMMVL IFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFRASKESKENIEEMARLREELSAKGYHLPPEKPKEEHFDSNC ITPGTPFMFRLADCLRYYIHDRLNNDPGWQNVKVILSDANVPGEGEHKIMDYIRRQRAQPDHDANTRHCLCGADADLIML GLATHEPNFTIIREEFVPNKPRPCNLCGQVGHEMKECTGLPKDMCGEHDELPKLMGEEQKFIFLRLNILREYLERELRMD NLPFKYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVRLYKDAVRKTGGFLTNSGVVNLERVQLVMSDLGKVE DEIFKRRRDTETRDGDGNQRGVKRKSDGDGQRGREQEEEEEEEKEPDDEVRLWEDGWKDRYYKSKFGVDVTDIDFRHTVA NHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNDFEKKTTPFKPLEQLMGVFPAASKKHLPVTWQRLMC DPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLAALENVYPDLTPGEQERNIWGDDRLFVGIRHPAYSFFEGL YEGSQVTEGVDVDTKLSQGMGGLVWCDNRAVMTGDTVPSPLPALQGIPDNRAICVKFKDPQFDPDFLFEAKVLPTAVMPD RVLKPEDFNRRNPGQHWMPQLGMSRQSGYQQNKDMGSAIRMVRHGIGSGGGGQFGNVPPPNYNQGGGGGGRQSMYQNHCN PSVPVPRVWCGNQYGGYGNNQQQYDNRGRNHGGSGNMGWQSNMRGQQNAYNSNQQRGYGGNQGGYGGNQGGYGGNQGGYG WNQGGYGGNRAYGGNQGGGYGGNQGGYGGNQGNYRGGNKYGGNQGGYNRQRY |
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