Gene
| Gene Model ID | pfu_aug1.0_60.1_29057 |
|---|---|
| Locus | scaffold60.1 : 121096 ... 141547 : + |
| To GenomeBrowser | scaffold60.1:121096..141547 |
| Genes list of scaffold | scaffold60.1 |
| Synonym | pfu_aug2.0_3083.1_12372 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_60.1_29057.t1 | 5 | 1 | HEAT_EZ | 12 | 44 | 2.9e-14 | 53.0 | 0.72 | 1500.0 | -0.2 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 1 | HEAT_2 | 24 | 98 | 2.6e-11 | 43.6 | 0.0055 | 12.0 | 6.3 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 1 | Vac14_Fab1_bd | 25 | 101 | 1.5e-09 | 38.1 | 0.025 | 54.0 | 4.2 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 1 | CLASP_N | 25 | 113 | 1.3e-07 | 31.2 | 1.7e-05 | 0.036 | 13.4 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 1 | HEAT | 27 | 54 | 6.7e-16 | 56.8 | 0.011 | 23.0 | 5.4 |
| pfu_aug1.0_60.1_29057.t1 | 5 | 2 | HEAT_EZ | 79 | 99 | 2.9e-14 | 53.0 | 0.081 | 170.0 | 2.8 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 2 | HEAT | 83 | 100 | 6.7e-16 | 56.8 | 0.018 | 37.0 | 4.7 |
| pfu_aug1.0_60.1_29057.t1 | 5 | 3 | HEAT_EZ | 152 | 190 | 2.9e-14 | 53.0 | 0.0011 | 2.2 | 8.8 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 2 | CLASP_N | 161 | 242 | 1.3e-07 | 31.2 | 0.02 | 42.0 | 3.3 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 2 | HEAT_2 | 171 | 271 | 2.6e-11 | 43.6 | 9.0e-11 | 1.9e-07 | 31.2 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 3 | HEAT | 177 | 193 | 6.7e-16 | 56.8 | 0.00052 | 1.1 | 9.5 |
| pfu_aug1.0_60.1_29057.t1 | 5 | 4 | HEAT_EZ | 179 | 232 | 2.9e-14 | 53.0 | 1.6e-10 | 3.3e-07 | 30.5 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 2 | Vac14_Fab1_bd | 183 | 269 | 1.5e-09 | 38.1 | 1.1e-06 | 0.0024 | 18.2 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 4 | HEAT | 207 | 234 | 6.7e-16 | 56.8 | 1.1e-07 | 0.00023 | 20.9 |
| pfu_aug1.0_60.1_29057.t1 | 5 | 5 | HEAT_EZ | 238 | 274 | 2.9e-14 | 53.0 | 0.00012 | 0.25 | 11.8 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 3 | HEAT_2 | 245 | 287 | 2.6e-11 | 43.6 | 0.0012 | 2.5 | 8.4 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 5 | HEAT | 248 | 277 | 6.7e-16 | 56.8 | 5.0e-06 | 0.011 | 15.8 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 3 | Vac14_Fab1_bd | 382 | 465 | 1.5e-09 | 38.1 | 0.00018 | 0.39 | 11.1 |
| pfu_aug1.0_60.1_29057.t1 | 3 | 3 | CLASP_N | 393 | 468 | 1.3e-07 | 31.2 | 0.00033 | 0.71 | 9.1 |
| pfu_aug1.0_60.1_29057.t1 | 6 | 6 | HEAT | 457 | 468 | 6.7e-16 | 56.8 | 0.45 | 950.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_60.1_29057.t1 | gi|260787960|ref|XP_002589019.1| | hypothetical protein BRAFLDRAFT_87492 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_60.1_29057.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29057.t1 atggaagtctttggagacatggatgaaagtgtagtggaaggctgtggtcacctctttaatccacatgtcgatcaggagtt attggacttgatcttccaggctttagaccacacaaacagatttgtccgggaaacagggtactatgtatgtggctcacttg tttccattggggtcaatcagacagataaggagacactaagtatggaagggaactctgtgtacaaatatggagaacagcta agtaaatacctggccaaaggactggctgacaactggagtcaggttcggctcgcagcgtctgtggccacacgtaagtttct acagagcttgcctacggaggaggctaaggccagattctttccaatcctccttccaaggatgtgtttgaacagatactatg tggcagagggagtgaggatatactctcaggacacctggcggcaggtcacagagggggagggccgacacctagtggagaaa catatcaaagttgtggtcgaatattatgtagaagcgacaggggcagataaccatgctgtaagggaagcagcctgtgcttg tatagcagagctaggatctaagattgacaggacatatgtaagaccgttcattccacaacttttagaagccttgttgattt gttttaatgatgacagttggccagtaagagatgctgcctgtgtagcctgcgggaattttgttctctgtttcccagaggaa tcaagggccagtatgccagcattgtatcctttatttttcaacaatctacaagacaacatagcctcagtgagacagggagc tgctctcgctttatccaatgtagtcaatgtttatggtcaagatagtttgaatgaaattgtgacaaagatgaaggaaggat ttaatggtgtggaaaagcaaccagaaacatcagaaaagtacagtgacttagataaaggtccagctacatacggggtcgtc aaaaagttgagggacaatgatatggaacttcacacggacaaacagatgtactcttgtggctctcttgctccaaaaatggg gcgtggttccaggggtggaggttgtatggatcacaagttcaggaagccaccagagccctgggaattggctgacggttgca tacatttgttagcagagttgagcacccaccaggacctcgctcaaactgtgaaccagttacttcccctccttgccaagtct gttacctaccagcattatccccagcatgtcacatactatgaaaccctctgtaaacagctaccaaacatagccaaaggttt aggaaagagacattttaagatgcatctagagtccttctttgattgtatattctacagtagtacctgtgataacgccctta cctccagtgccgctagtcaatgtcttaaccagttaagcagttttctgggacccagtatactcagaggaagagtagaacaa tataatcctagatatgtagaacacttggacagaaaccagttcatagctccactataa |
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Protein
| Protein ID | pfu_aug1.0_60.1_29057.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_60.1_29057.t1 MEVFGDMDESVVEGCGHLFNPHVDQELLDLIFQALDHTNRFVRETGYYVCGSLVSIGVNQTDKETLSMEGNSVYKYGEQL SKYLAKGLADNWSQVRLAASVATRKFLQSLPTEEAKARFFPILLPRMCLNRYYVAEGVRIYSQDTWRQVTEGEGRHLVEK HIKVVVEYYVEATGADNHAVREAACACIAELGSKIDRTYVRPFIPQLLEALLICFNDDSWPVRDAACVACGNFVLCFPEE SRASMPALYPLFFNNLQDNIASVRQGAALALSNVVNVYGQDSLNEIVTKMKEGFNGVEKQPETSEKYSDLDKGPATYGVV KKLRDNDMELHTDKQMYSCGSLAPKMGRGSRGGGCMDHKFRKPPEPWELADGCIHLLAELSTHQDLAQTVNQLLPLLAKS VTYQHYPQHVTYYETLCKQLPNIAKGLGKRHFKMHLESFFDCIFYSSTCDNALTSSAASQCLNQLSSFLGPSILRGRVEQ YNPRYVEHLDRNQFIAPL |
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