Gene
| Gene Model ID | pfu_aug1.0_6051.1_16824 |
|---|---|
| Locus | scaffold6051.1 : 42412 ... 43972 : - |
| To GenomeBrowser | scaffold6051.1:42412..43972 |
| Genes list of scaffold | scaffold6051.1 |
| Synonym | pfu_aug2.0_213.1_10444 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | GDF2-like |
| Description | NCBI BLASTP hit to emb|CAD67714.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6051.1_16824.t1 | 1 | 1 | TGFb_propeptide | 20 | 141 | 9.8e-21 | 74.1 | 1.8e-24 | 1.4e-20 | 73.6 |
| pfu_aug1.0_6051.1_16824.t1 | 1 | 1 | TGF_beta | 189 | 289 | 8.1e-29 | 99.9 | 2.3e-32 | 1.7e-28 | 98.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6051.1_16824.t1 | gi|28475271|emb|CAD67714.1| | GDF2 precursor [Crassostrea gigas] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6051.1_16824.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6051.1_16824.t1 tttatttataattgcaggtgacgtggataaaactgttaaagcagacaacgacgataccaatgtaaaaaaagattccactc gaataagattcaacgttgatgttacgcatcctgaaagtgaccataacttggaaacaagagtccatatggcgaaacttaga atattcaaacatgtctcttcaaagtcagtgcagggtacggacaaccaagaaatcgttatcaaaatattccaaattcagca tcaaaagagtgtgaacaaactactacagtctcgtattgttgacatttcgcgggacggatgggaaatatttgacataacaa atactgtgcaagattggattgacaatccagatacaaactatggcttagaaattcacacagaccatccgaatactagcagc ttgatactgccgagcgctgattttcatatagacaatgctgtcaataattctgtagaactctcataccatccagtcctaga atttcaaacgcacgaacgatcgattcttaagcgcgccaaacgacaagattccggaaggcgcgattgtacgaaaggtgatg gtgaaactaggtgctgtcgttttaaaacgcgcatttcattccgtgaaattggctggaatgactggattatcgcccctgag gggtttgatgcgtactattgtgatggggaatgtccctacagatttaaaatggcgagtaactttgcagctgtccagtcagt gttgcatatgaataacccaacgaagtatccaaagttgtgctgtgtcccctcaaagctaagtcctctgacgatcttacata aagacgacaaggggcgctacatgtttactgattatcctgatctagtcgtacaagattgtaaatgttcttaa |
|
Protein
| Protein ID | pfu_aug1.0_6051.1_16824.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6051.1_16824.t1 LFIIAGDVDKTVKADNDDTNVKKDSTRIRFNVDVTHPESDHNLETRVHMAKLRIFKHVSSKSVQGTDNQEIVIKIFQIQH QKSVNKLLQSRIVDISRDGWEIFDITNTVQDWIDNPDTNYGLEIHTDHPNTSSLILPSADFHIDNAVNNSVELSYHPVLE FQTHERSILKRAKRQDSGRRDCTKGDGETRCCRFKTRISFREIGWNDWIIAPEGFDAYYCDGECPYRFKMASNFAAVQSV LHMNNPTKYPKLCCVPSKLSPLTILHKDDKGRYMFTDYPDLVVQDCKCS |
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