Gene
| Gene Model ID | pfu_aug1.0_6055.1_52689 |
|---|---|
| Locus | scaffold6055.1 : 50 ... 10598 : + |
| To GenomeBrowser | scaffold6055.1:50..10598 |
| Genes list of scaffold | scaffold6055.1 |
| Synonym | pfu_aug2.0_14605.1_19849 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6055.1_52689.t1 | 3 | 1 | Smg4_UPF3 | 22 | 186 | 0.0 | 167.9 | 0.0 | 0.0 | 167.9 |
| pfu_aug1.0_6055.1_52689.t1 | 3 | 2 | Smg4_UPF3 | 220 | 246 | 0.0 | 167.9 | 1.0 | 15000.0 | -5.8 |
| pfu_aug1.0_6055.1_52689.t1 | 3 | 3 | Smg4_UPF3 | 264 | 276 | 0.0 | 167.9 | 0.69 | 10000.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6055.1_52689.t1 | gi|241723783|ref|XP_002404304.1| | regulator of nonsense transcripts 3B, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6055.1_52689.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6055.1_52689.t1 atgaaagctttcgtcatggggaatatatatgtcaaatatcaaagccctatcccttataatttaaaagttgtgatgaggcg tcttccaccaagtttgaccccagaggatttgatagagcaaatttctcctctaccaaaccatgacttcttctactttgtca aagcagatatgagtttggggagtagtgcattcacaagggcatacataaattttacaaatgcagaagaaatcttcaatttc cgggataaatttgatggctatgtctttgttgatggtaaaggaaatgaatacccagctattgtagaattttcaccttttca aaaagttccaaaaagaaaaacaaagaaaccagatgctaaaaaaggaacaattgaacaggatccagattaccagaaatttc tcaagactctggaatccccggaggaagaagaagtgaaatctctggactcttacctggaagacctggaggcaagagagaaa gaaatgaaagcaaacaagggatgcccaaagaccaccactccacttattgagtatttagtgcgtagaagagaggagaaaaa ggcaaatatgctgaaaattcaagaagaaaggaaaaagagagaacaggagaggagaagattaagagatgaagaaaggagga aaagaagagaaaaggaaagagaacgtgaacaagaaagattgagagagaagcagagggagaaaaatccagactcaaagagt gagcaacctgtaaaggttttaatgaaaaatcctgacagagaaaaagattcagataaagtttctagaacagagaaatccgg ggaaaaggatgtcagcaaatcaagggaaacaaaagaggaagaaaaaggaaagagagagaaaaatacttacggagacagga agtatgaagaaaagaaaggaagatccgggaaagattatgatgaacgagagaggggcaaacctgaccgagcgaaggacaga gagcagggcagacaaaggggggataaagactttgatagaagagataaagacttcgatagaagagataaagactttgatag aagagataaagatttcgatagaagagataaagattatgatagaagagataaagacttcgatagaagagataaagacttcg atagaagagataaagattatgatagaagagataaagacttggatagaagagataaagacttcgatagaagagataaagat ttcgatagaagagatagagatttcgatagaagagataaaggtgggagggactgggatagaagggatgaggactatgacta caaaaatagggagaggcacgataaatacaggggggacaagtctgagacggaaaggtctgatgccagtcgtaagaagtcta cagagtcaggggtcagtcagagtggaaaagttactgccgagagtaagaaagataaaccagtcaagacaaagaggaaagac cagaacgggaaatctatgatccaagaaaagctgctgaaagaaggaggttag |
|
Protein
| Protein ID | pfu_aug1.0_6055.1_52689.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6055.1_52689.t1 MKAFVMGNIYVKYQSPIPYNLKVVMRRLPPSLTPEDLIEQISPLPNHDFFYFVKADMSLGSSAFTRAYINFTNAEEIFNF RDKFDGYVFVDGKGNEYPAIVEFSPFQKVPKRKTKKPDAKKGTIEQDPDYQKFLKTLESPEEEEVKSLDSYLEDLEAREK EMKANKGCPKTTTPLIEYLVRRREEKKANMLKIQEERKKREQERRRLRDEERRKRREKEREREQERLREKQREKNPDSKS EQPVKVLMKNPDREKDSDKVSRTEKSGEKDVSKSRETKEEEKGKREKNTYGDRKYEEKKGRSGKDYDERERGKPDRAKDR EQGRQRGDKDFDRRDKDFDRRDKDFDRRDKDFDRRDKDYDRRDKDFDRRDKDFDRRDKDYDRRDKDLDRRDKDFDRRDKD FDRRDRDFDRRDKGGRDWDRRDEDYDYKNRERHDKYRGDKSETERSDASRKKSTESGVSQSGKVTAESKKDKPVKTKRKD QNGKSMIQEKLLKEGG |
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