Gene
| Gene Model ID | pfu_aug1.0_6058.1_59920 |
|---|---|
| Locus | scaffold6058.1 : 11574 ... 50045 : - |
| To GenomeBrowser | scaffold6058.1:11574..50045 |
| Genes list of scaffold | scaffold6058.1 |
| Synonym | pfu_aug2.0_85.1_16872 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6058.1_59920.t1 | 2 | 1 | tRNA-synt_1g | 44 | 83 | 0.0 | 192.1 | 7.6e-16 | 5.7e-12 | 44.9 |
| pfu_aug1.0_6058.1_59920.t1 | 2 | 1 | tRNA-synt_1 | 45 | 91 | 3.8e-13 | 48.3 | 7.7e-12 | 5.7e-08 | 31.2 |
| pfu_aug1.0_6058.1_59920.t1 | 2 | 2 | tRNA-synt_1g | 103 | 251 | 0.0 | 192.1 | 0.0 | 5.49309e-43 | 147.1 |
| pfu_aug1.0_6058.1_59920.t1 | 2 | 2 | tRNA-synt_1 | 107 | 175 | 3.8e-13 | 48.3 | 9.0e-08 | 0.00066 | 17.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6058.1_59920.t1 | gi|297264627|ref|XP_002799060.1| | PREDICTED: methionyl-tRNA synthetase, mitochondrial-like isoform 2 [Macaca mulatta] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6058.1_59920.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6058.1_59920.t1 atgacaatattctataacacgaatccaaggaaataccccctcattaggattggtaaatatttcgcttgcagaggagacgt caaaaatgttaaaagtttacgccggacggacgacggacggggcgctatgacagcacctcacattggccatctacatacag cagtattagccgatgtcctctccagatggaaaagacttcagggagttggtgtattgtttactaccggcactgatgaacat ggacttaaggagtttgtggtagagtcagatgtccaagatggaactgataaaagtggaacaccttgtaagatctctagatt aagtggacatccagttgtgtggacacaagaagaaaattatttatttagattaagtgaatttaaatcagagctaacagaat ggttggatcagaaagttatacaaccacaaggttttgaaactgaaatgcgtgaatggatcgagaatttaaaggacatatct gtgtctagaccgagtcagcggctaacttggggaattccagtgcctgatgatccatcacaaacgatttatgtatggctaga tgcactggtaaattactatacctcagctaagtcctatgatctgaagttctggccaccggatgtacatgtcgtgggaaaag atattttaaagttccatgcagtttactggccggcattccttctggcagctaatcttcctttacctcgtagggtcctatgt cattcacattggcttgtagaggaaagaaaaattatttag |
|
Protein
| Protein ID | pfu_aug1.0_6058.1_59920.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6058.1_59920.t1 MTIFYNTNPRKYPLIRIGKYFACRGDVKNVKSLRRTDDGRGAMTAPHIGHLHTAVLADVLSRWKRLQGVGVLFTTGTDEH GLKEFVVESDVQDGTDKSGTPCKISRLSGHPVVWTQEENYLFRLSEFKSELTEWLDQKVIQPQGFETEMREWIENLKDIS VSRPSQRLTWGIPVPDDPSQTIYVWLDALVNYYTSAKSYDLKFWPPDVHVVGKDILKFHAVYWPAFLLAANLPLPRRVLC HSHWLVEERKII |
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