Gene
| Gene Model ID | pfu_aug1.0_610.1_15155 |
|---|---|
| Locus | scaffold610.1 : 16656 ... 44434 : + |
| To GenomeBrowser | scaffold610.1:16656..44434 |
| Genes list of scaffold | scaffold610.1 |
| Synonym | pfu_aug2.0_4996.1_22633 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_610.1_15155.t1 | 5 | 1 | TMF_TATA_bd | 637 | 686 | 1.3e-20 | 73.2 | 0.47 | 3500.0 | -2.4 |
| pfu_aug1.0_610.1_15155.t1 | 5 | 2 | TMF_TATA_bd | 687 | 756 | 1.3e-20 | 73.2 | 0.47 | 3500.0 | -2.4 |
| pfu_aug1.0_610.1_15155.t1 | 4 | 1 | TMF_DNA_bd | 702 | 739 | 7.8e-18 | 64.0 | 0.042 | 310.0 | 1.2 |
| pfu_aug1.0_610.1_15155.t1 | 4 | 2 | TMF_DNA_bd | 739 | 811 | 7.8e-18 | 64.0 | 1.1e-21 | 7.8e-18 | 64.0 |
| pfu_aug1.0_610.1_15155.t1 | 5 | 3 | TMF_TATA_bd | 740 | 803 | 1.3e-20 | 73.2 | 0.092 | 680.0 | -0.1 |
| pfu_aug1.0_610.1_15155.t1 | 5 | 4 | TMF_TATA_bd | 814 | 898 | 1.3e-20 | 73.2 | 0.078 | 580.0 | 0.2 |
| pfu_aug1.0_610.1_15155.t1 | 4 | 3 | TMF_DNA_bd | 815 | 854 | 7.8e-18 | 64.0 | 0.00011 | 0.82 | 9.5 |
| pfu_aug1.0_610.1_15155.t1 | 4 | 4 | TMF_DNA_bd | 939 | 989 | 7.8e-18 | 64.0 | 0.019 | 140.0 | 2.3 |
| pfu_aug1.0_610.1_15155.t1 | 5 | 5 | TMF_TATA_bd | 947 | 1024 | 1.3e-20 | 73.2 | 1.8e-24 | 1.3e-20 | 73.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_610.1_15155.t1 | gi|291240113|ref|XP_002739966.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_610.1_15155.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_610.1_15155.t1 atgagttggtgggacagtagttccttttcaagttttgccagccaggcactcaaaaatgcacagaagaaaattgacaaagt cctagacattaaagactctgaaaaagatgatactgaacaagaatctaatgaagaactgactggcagtataaagggagaaa ctgaaaaggatagtaaaggggaagagcaagataaatgtgaaagtgaaagtactgatgcatctggtgcacatagtgataag tcagaaaatgttcttccgaaagtgggggcagttgaagatgatgaatttgataaatctgacattctaaaagtgactgtcag tcccccacaggatcgtgaggcagaaaaagaaacaagagggtctgatccaagcgttttgcaaattgatgaaactcaaagtg ttgtgaaagataaagattttcatgtaacatctagtgacaaagatcatgaaacagacttccaaaacctaaacaatgaaagt gtaaaagaagacgatacaatcaaaaatgatagaacagaaagtgaagttaacatccatttaaatgtgccaactgatggaaa atctacgtcatgtgtggaagagactagtgaaaataattcgggaaatgtttcaggtactgctgagatttctttatcagaag aagttattgaagctaaggaagaaagtaaagattctattgaggttggttttcctggagctgaagaggagagtgatttagga aaccttccagttcctgagagtgatagcacccttgttgttaatatcagtgaagaagatagagaatacgatgaacagtgtag tgacacggataaaatgggggatagtgccgataatcagcatctttgtgattttcagctgagtgacttagctttatcctctg aaaaatctcaagacgaaattgcatttacaaatcagggagtaaaggatgaaaattcttgtgatggaggttcactagagtat tccttttcatcgttgaaagatgacacaggcatttttccatcaggaaatacagactgcgaggaagaaattgttgatcctct gagttcctcatccatagacatatctgctgataaaattcaagaaagtgtgaaaagcttcttcgatggtgccatagacagtc gaattataaattcggattctacagattcaaacaggatatcagatctgccactcagcccttccactgctagttcgttaggt ggtacggactcggacaccaacaaactggacagtagcttggatgcttacacctcagacgatactgtagtggataagatgag tgaagaacagtcttggagtcgagttgtccatggtgaaaatagtacagtgactactgagagtagcaacagtcaagatgatc tgaccaatcaacaggaaattgaagaaactggtaatgctgaagatatgcaagagtctgaggccaaaaatggcagtagcggt agtgtatctccaagcagctcctacgtcaagtgtatgattgaggaagccatggacgacaacgctagcgacacacattccaa cggaggtgaaaaatcggagtgctctcggagcactggaggtcatgattctggggatgaaatatcaacaactacttcatctg acattgagattatttccactccgactccgaacggagatggaagcaaagtggttgatttgtctccccttagaattgctcta cagaaaactgccaacagagggagcttgacacacagacgctcagacagtcagtcaacaacgtccagtagagacggacagtg tgatcaactcagcccgggaagagaaacactggattctatggttgacgatgtgaactttagtggagagagaagactttcac aggaaactgataagagccagcgatctgaattaccaccccttagtgaagaaagactggatattcaacagcagcagaaatta cagaagaagctggctgagatgacagaggtactcaacgctagggaaaataaattagtacaactcagcaaagaaaatcatga tctacttgaatccaacagcatcttgagaagtcaactacagcaggtagaggaagccagagaagctgaactggaggacatta acaaagtcacaaccgagtttactcagagactgtctgactcagagaaacgagtcaatcaggcaataagggaaaaagaggca gtcaaaaaacaactccaaagggcccaagaagacttggagaaaaagataaaggacaagtctttacagaatcttataaagga gaaggaccagcagatagatgaactgatgcaagaaggtgaaaagttatccaagcaacaactacaagtcaacaccataataa agaagctacgtgtaaaagaaaaagaaaacgagtctctcataacttctcaaaagaaaaaattagaagatcagaaatcagaa ttagatcacctacgtaaagtttgtgaatctaaggatgatctcgaaaagaaacaaactgaggcaataggccagctgaatgc tgctgtacagagacaggaaagagaaatgtcaaagttaaagagtgatcatgacgatgcacaagaaagagtacggggccttc agaccgccttagataactcctacaaggagatagcagatctacacagatcaaacgctgcacaggacagtaaagcccatgaa gcagcgcttagcgccgagatgcaggtccgagaggagctaaaaatacaactagaccacgagaggaaagctttcgtacagga gaaagaggcacttgtcatgcaggttttcctcgaaacacagcttgacatggagaaaacaaaagtagaccaggaaaagaaaa agtttgcattagctcaggaccagatcttacaactaaatgatatacagcagctagagaggaccagggagtctatggctcgg gaacttgttaatctgaccaatcaaaatgaagaactacagagtcaggtggaacaacttccacaatataaatccaagttaga ggatgtagatggtcgctacaacgccttgcttcagatgtatggtgaaaaagtcgaggaagctgaggaactacgcatggact tacaggacgttaaggaaatgtataaggcacagtggtaa |
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Protein
| Protein ID | pfu_aug1.0_610.1_15155.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_610.1_15155.t1 MSWWDSSSFSSFASQALKNAQKKIDKVLDIKDSEKDDTEQESNEELTGSIKGETEKDSKGEEQDKCESESTDASGAHSDK SENVLPKVGAVEDDEFDKSDILKVTVSPPQDREAEKETRGSDPSVLQIDETQSVVKDKDFHVTSSDKDHETDFQNLNNES VKEDDTIKNDRTESEVNIHLNVPTDGKSTSCVEETSENNSGNVSGTAEISLSEEVIEAKEESKDSIEVGFPGAEEESDLG NLPVPESDSTLVVNISEEDREYDEQCSDTDKMGDSADNQHLCDFQLSDLALSSEKSQDEIAFTNQGVKDENSCDGGSLEY SFSSLKDDTGIFPSGNTDCEEEIVDPLSSSSIDISADKIQESVKSFFDGAIDSRIINSDSTDSNRISDLPLSPSTASSLG GTDSDTNKLDSSLDAYTSDDTVVDKMSEEQSWSRVVHGENSTVTTESSNSQDDLTNQQEIEETGNAEDMQESEAKNGSSG SVSPSSSYVKCMIEEAMDDNASDTHSNGGEKSECSRSTGGHDSGDEISTTTSSDIEIISTPTPNGDGSKVVDLSPLRIAL QKTANRGSLTHRRSDSQSTTSSRDGQCDQLSPGRETLDSMVDDVNFSGERRLSQETDKSQRSELPPLSEERLDIQQQQKL QKKLAEMTEVLNARENKLVQLSKENHDLLESNSILRSQLQQVEEAREAELEDINKVTTEFTQRLSDSEKRVNQAIREKEA VKKQLQRAQEDLEKKIKDKSLQNLIKEKDQQIDELMQEGEKLSKQQLQVNTIIKKLRVKEKENESLITSQKKKLEDQKSE LDHLRKVCESKDDLEKKQTEAIGQLNAAVQRQEREMSKLKSDHDDAQERVRGLQTALDNSYKEIADLHRSNAAQDSKAHE AALSAEMQVREELKIQLDHERKAFVQEKEALVMQVFLETQLDMEKTKVDQEKKKFALAQDQILQLNDIQQLERTRESMAR ELVNLTNQNEELQSQVEQLPQYKSKLEDVDGRYNALLQMYGEKVEEAEELRMDLQDVKEMYKAQW |
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