Gene
| Gene Model ID | pfu_aug1.0_6114.1_59938 |
|---|---|
| Locus | scaffold6114.1 : 1 ... 20005 : - |
| To GenomeBrowser | scaffold6114.1:1..20005 |
| Genes list of scaffold | scaffold6114.1 |
| Synonym | pfu_aug2.0_1326.1_21547 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6114.1_59938.t2 | 3 | 1 | SF3b1 | 198 | 254 | 2.3e-39 | 134.7 | 0.00025 | 1.2 | 9.1 |
| pfu_aug1.0_6114.1_59938.t2 | 3 | 2 | SF3b1 | 255 | 311 | 2.3e-39 | 134.7 | 0.0002 | 1.0 | 9.4 |
| pfu_aug1.0_6114.1_59938.t2 | 3 | 3 | SF3b1 | 322 | 484 | 2.3e-39 | 134.7 | 3.2e-39 | 1.6e-35 | 122.3 |
| pfu_aug1.0_6114.1_59938.t2 | 3 | 1 | HEAT_2 | 577 | 661 | 3.1e-08 | 33.7 | 0.00013 | 0.64 | 10.3 |
| pfu_aug1.0_6114.1_59938.t2 | 3 | 2 | HEAT_2 | 718 | 796 | 3.1e-08 | 33.7 | 1.1e-05 | 0.056 | 13.7 |
| pfu_aug1.0_6114.1_59938.t2 | 3 | 3 | HEAT_2 | 845 | 900 | 3.1e-08 | 33.7 | 0.003 | 15.0 | 5.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 5 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6114.1_59938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6114.1_59938.t1 atgattaaatcgcctgaccgccgccattcggtgttgaacttgaccgttattgacctgattatatcagatgaccttcaccc tggaaacttcgaaattgaagagcaagtaagacagctgcagaataaaaagaaatctatcggtgcctcaagcgtcacagagg aagatgagcctagacgagtcggactgggttccgagggtcactttgacacagatatttatagctcggggaaacccaaattc tttggttacgtcacatccatagcagcaacagatgaaaaagatgacgatgatgaagtcactgaacattaccccaaaaaatc aaactacacagccccgcttaatttcctcaacgacacacttaatgacaaggactacgatcccatggccgaacacagacccc agaggatctcggaaaaacaaggggaatacaaagaaaggatgagaaacaggatcatctcccctgaaagatacgatcccttt gccgaaggcgggaagactccagatgtcggggctaggacttttgcaaaggtcatgacaagccagtatctagacagagaaaa aaaactactgcagaatcagatggtagaaaaagctaaagctggagaactacactcagtaaacggttcatcaggggatgcct ccgcacaaaaagccgccagtttgcaggagaagaaaaaacggcgctgggatcaagcctcagacgacacaccagctaaaaaa tccaaaacctgggagaatgcagaaactccgtcaaatacacggtgggatgaaactcctggtagacctaaaggttctgagac cccaggggcaacgccgggacagagtaccaggatgtgggatgccacgcccggacatgccaccccaggggcagtaacttctg gtagggatacgcctggacatcagggaacaccaagtgctaggaggaacagatgggacgagacaccgagaactgagagagaa actcctggacatggcagtggatgggcagagacaccgaagactgacaggggtggggatctaatacaagacacgcctactcc cagtgctagtaaaaggagatcgcgatgggacgagacccccggggcacaaaccccaggatctatgacccctagtgccatga ctccaagtatgacccctgggaatcagacccctggagggtcaacacccagtggctttactcctggaggctccacaccttca ggttttaccccgggaggaatcacacctagcggtacaacccctgtaggtgctaaggctatggccatggcgacacccactcc tggtcacctgttgtcaatgaccccagaacagatgcaggcctacacgtggcagagagagattgacgagagaaacgctccta tgtccgatgatgatctggacgctttgtttcctccaggatataaggttctacaacccccagcaggttatgtacccatccgt accccggcccgtaagctgattgccacgcccacaccgatggcaggcacgccccagggctttaggatgcagaccccggacag taagacgcagattgtagacatgcagcccaaagggaacttacccatgatgaagccagacgacatgcagtactttgataagc tactggctgctttaagacaaatcacagacaaagcgcgggagtttggagcgggtccattattcaaccagatccttcccctc ttgatgtctccgacactcgaagatcaggagcgccatctgttggtgaaagtcattgatcgaattctctacaaacttgacga tctggtccgaccgtacgtccacaaaattcttgtcgttattgagcccctgctcattgatgaagattattatgccagagtgg aaggcagagaaattatatctaacttggccaaggctgcaggtttagccaccatgatttccacaatgcgtccagacattgac aacttggacgagtacgtccgtaacaccacagccagagcgttcgctgtcgtcgcctcagctcttggaatcccctccctcct gcccttccttaaggctgtttgtaagagtaagaagtcctggcaggccagacatactggtataaagatcgtacaacaaatcg ctattttgatgggctgtgccatccttccacatcttaaaagcttggtggaaattattgaacacgaacggacgaatatttgt ttacgattggttcatttattctaccacttgattaagatcatctgcgtctggacattgatacatgagaaagtccaggagaa ctgtatagacttggtgggaaggatcgcagatcgtggagcagagtacgtgtcggcaagggaatggatgagaatctgctttg agctgttagaactactcaaagctcacaaaaaagccatcagaagggccactgtcaatacgtttggttatattgctaaggct attggtcctcacgacgtgttagcaactctcctcaataatctcaaagtacaggaaagacagaatcgtgtgtgtacaacagt cgccatagcaatcgtagcagagacatgttcacctttcacagtgttaccagctttaatgaacgagtatagagtgccagaac ttaacgttcagaatggagttctcaagtcgttgtcgtttatgttcgagtatatcggagaaatgggaaaagattatatttat tctgtagctccacttttagaagatgctctcatggacagagatctggtacacagacagacagccatggcagccattcaaca catggcgttaggagtgtttggttttggctgtgaggatgctctcactcacctacttaattat |
|
| Transcript ID | pfu_aug1.0_6114.1_59938.t2 |
| Definition | - |
>pfu_aug1.0_6114.1_59938.t2 atgctaaaattagcctgtgaaattgaagagcaagtaagacagctgcagaataaaaagaaatctatcggtgcctcaagcgt cacagaggaagatgagcctagacgagtcggactgggttccgagggtcactttgacacagatatttatagctcggggaaac ccaaattctttggttacgtcacatccatagcagcaacagatgaaaaagatgacgatgatgaagtcactgaacattacccc aaaaaatcaaactacacagccccgcttaatttcctcaacgacacacttaatgacaaggactacgatcccatggccgaaca cagaccccagaggatctcggaaaaacaaggggaatacaaagaaaggatgagaaacaggatcatctcccctgaaagatacg atccctttgccgaaggcgggaagactccagatgtcggggctaggacttttgcaaaggtcatgacaagccagtatctagac agagaaaaaaaactactgcagaatcagatggtagaaaaagctaaagctggagaactacactcagtaaacggttcatcagg ggatgcctccgcacaaaaagccgccagtttgcaggagaagaaaaaacggcgctgggatcaagcctcagacgacacaccag ctaaaaaatccaaaacctgggagaatgcagaaactccgtcaaatacacggtgggatgaaactcctggtagacctaaaggt tctgagaccccaggggcaacgccgggacagagtaccaggatgtgggatgccacgcccggacatgccaccccaggggcagt aacttctggtagggatacgcctggacatcagggaacaccaagtgctaggaggaacagatgggacgagacaccgagaactg agagagaaactcctggacatggcagtggatgggcagagacaccgaagactgacaggggtggggatctaatacaagacacg cctactcccagtgctagtaaaaggagatcgcgatgggacgagacccccggggcacaaaccccaggatctatgacccctag tgccatgactccaagtatgacccctgggaatcagacccctggagggtcaacacccagtggctttactcctggaggctcca caccttcaggttttaccccgggaggaatcacacctagcggtacaacccctgtaggtgctaaggctatggccatggcgaca cccactcctggtcacctgttgtcaatgaccccagaacagatgcaggcctacacgtggcagagagagattgacgagagaaa cgctcctatgtccgatgatgatctggacgctttgtttcctccaggatataaggttctacaacccccagcaggttatgtac ccatccgtaccccggcccgtaagctgattgccacgcccacaccgatggcaggcacgccccagggctttaggatgcagacc ccggacagtaagacgcagattgtagacatgcagcccaaagggaacttacccatgatgaagccagacgacatgcagtactt tgataagctactggctgctttaagacaaatcacagacaaagcgcgggagtttggagcgggtccattattcaaccagatcc ttcccctcttgatgtctccgacactcgaagatcaggagcgccatctgttggtgaaagtcattgatcgaattctctacaaa cttgacgatctggtccgaccgtacgtccacaaaattcttgtcgttattgagcccctgctcattgatgaagattattatgc cagagtggaaggcagagaaattatatctaacttggccaaggctgcaggtttagccaccatgatttccacaatgcgtccag acattgacaacttggacgagtacgtccgtaacaccacagccagagcgttcgctgtcgtcgcctcagctcttggaatcccc tccctcctgcccttccttaaggctgtttgtaagagtaagaagtcctggcaggccagacatactggtataaagatcgtaca acaaatcgctattttgatgggctgtgccatccttccacatcttaaaagcttggtggaaattattgaacacgaacggacga atatttgtttacgattggttcatttattctaccacttgattaagatcatctgcgtctggacattgatacatgagaaagtc caggagaactgtatagacttggtgggaaggatcgcagatcgtggagcagagtacgtgtcggcaagggaatggatgagaat ctgctttgagctgttagaactactcaaagctcacaaaaaagccatcagaagggccactgtcaatacgtttggttatattg ctaaggctattggtcctcacgacgtgttagcaactctcctcaataatctcaaagtacaggaaagacagaatcgtgtgtgt acaacagtcgccatagcaatcgtagcagagacatgttcacctttcacagtgttaccagctttaatgaacgagtatagagt gccagaacttaacgttcagaatggagttctcaagtcgttgtcgtttatgttcgagtatatcggagaaatgggaaaagatt atatttattctgtagctccacttttagaagatgctctcatggacagagatctggtacacagacagacagccatggcagcc attcaacacatggcgttaggagtgtttggttttggctgtgaggatgctctcactcacctacttaattat |
|
Protein
| Protein ID | pfu_aug1.0_6114.1_59938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6114.1_59938.t1 MIKSPDRRHSVLNLTVIDLIISDDLHPGNFEIEEQVRQLQNKKKSIGASSVTEEDEPRRVGLGSEGHFDTDIYSSGKPKF FGYVTSIAATDEKDDDDEVTEHYPKKSNYTAPLNFLNDTLNDKDYDPMAEHRPQRISEKQGEYKERMRNRIISPERYDPF AEGGKTPDVGARTFAKVMTSQYLDREKKLLQNQMVEKAKAGELHSVNGSSGDASAQKAASLQEKKKRRWDQASDDTPAKK SKTWENAETPSNTRWDETPGRPKGSETPGATPGQSTRMWDATPGHATPGAVTSGRDTPGHQGTPSARRNRWDETPRTERE TPGHGSGWAETPKTDRGGDLIQDTPTPSASKRRSRWDETPGAQTPGSMTPSAMTPSMTPGNQTPGGSTPSGFTPGGSTPS GFTPGGITPSGTTPVGAKAMAMATPTPGHLLSMTPEQMQAYTWQREIDERNAPMSDDDLDALFPPGYKVLQPPAGYVPIR TPARKLIATPTPMAGTPQGFRMQTPDSKTQIVDMQPKGNLPMMKPDDMQYFDKLLAALRQITDKAREFGAGPLFNQILPL LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDID NLDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIEHERTNIC LRLVHLFYHLIKIICVWTLIHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDYIY SVAPLLEDALMDRDLVHRQTAMAAIQHMALGVFGFGCEDALTHLLNY |
|
| Protein ID | pfu_aug1.0_6114.1_59938.t2 |
| Definition | - |
>pfu_aug1.0_6114.1_59938.t2 MLKLACEIEEQVRQLQNKKKSIGASSVTEEDEPRRVGLGSEGHFDTDIYSSGKPKFFGYVTSIAATDEKDDDDEVTEHYP KKSNYTAPLNFLNDTLNDKDYDPMAEHRPQRISEKQGEYKERMRNRIISPERYDPFAEGGKTPDVGARTFAKVMTSQYLD REKKLLQNQMVEKAKAGELHSVNGSSGDASAQKAASLQEKKKRRWDQASDDTPAKKSKTWENAETPSNTRWDETPGRPKG SETPGATPGQSTRMWDATPGHATPGAVTSGRDTPGHQGTPSARRNRWDETPRTERETPGHGSGWAETPKTDRGGDLIQDT PTPSASKRRSRWDETPGAQTPGSMTPSAMTPSMTPGNQTPGGSTPSGFTPGGSTPSGFTPGGITPSGTTPVGAKAMAMAT PTPGHLLSMTPEQMQAYTWQREIDERNAPMSDDDLDALFPPGYKVLQPPAGYVPIRTPARKLIATPTPMAGTPQGFRMQT PDSKTQIVDMQPKGNLPMMKPDDMQYFDKLLAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYK LDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNLDEYVRNTTARAFAVVASALGIP SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIEHERTNICLRLVHLFYHLIKIICVWTLIHEKV QENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVC TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDYIYSVAPLLEDALMDRDLVHRQTAMAA IQHMALGVFGFGCEDALTHLLNY |
|