Gene
| Gene Model ID | pfu_aug1.0_61157.1_63590 |
|---|---|
| Locus | scaffold61157.1 : 1 ... 825 : - |
| To GenomeBrowser | scaffold61157.1:1..825 |
| Genes list of scaffold | scaffold61157.1 |
| Synonym | pfu_aug2.0_2348.1_28770 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Oligo-like |
| Description | Best hit to AAH34681 OLIG2 protein [Homo sapiens] with 6e-30 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_61157.1_63590.t1 | 2 | 1 | HLH | 57 | 106 | 3.8e-13 | 48.8 | 4.6e-17 | 6.8e-13 | 48.1 |
| pfu_aug1.0_61157.1_63590.t1 | 2 | 2 | HLH | 109 | 120 | 3.8e-13 | 48.8 | 0.5 | 7300.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_61157.1_63590.t1 | gi|348517523|ref|XP_003446283.1| | PREDICTED: oligodendrocyte transcription factor 3-like [Oreochromis niloticus] | 9.0e-25 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_61157.1_63590.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_61157.1_63590.t1 atggctttgtcagattacgaaattaatgtggacgtcattgaagaagacgcatcttatgatagtgggatctatgaaaatga cacttctaatgactcgttgatttcgtcagagttttccagtcctaaagtgcgctcaaaaacacgtgtaccggaagacatca gactgcgcatcaacagcagagagcgacagcgcatgcacgatttgaattcagcattagaaggtctaagacaggtgatgcca tactctaatggaccaaacgtgaagaaactgtcaaaaatgtcgactttactattagccaggaattacattgtgatgttgac acgttcacttgatgaaatgaagaaactagtacaggacttatcggcgaacaagcccgtcccgatgccgacgatgccaccga cagcgcctatcatggaggtaagaccaacagcgcctatctcggatgtaagaccaacagcgcctatcccggatgtaagcgga attgcgcatgtcatgtatccatcagtaccgccaactacacgctactcgccgtacaaggtaccctcctcgccttattcgcc ctctacgcattattcgtcgactcctacaagaattcgtcatcatccgtacggccggatctcttcgactccgctttcggatt cgacaaatattcgtccagaatcagaacctgtgacatcaactcccgctgtaccacacaagttttccgtcgcctctttgtta aaggacaccggaagttcaccgaaagtgtctcc |
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Protein
| Protein ID | pfu_aug1.0_61157.1_63590.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_61157.1_63590.t1 MALSDYEINVDVIEEDASYDSGIYENDTSNDSLISSEFSSPKVRSKTRVPEDIRLRINSRERQRMHDLNSALEGLRQVMP YSNGPNVKKLSKMSTLLLARNYIVMLTRSLDEMKKLVQDLSANKPVPMPTMPPTAPIMEVRPTAPISDVRPTAPIPDVSG IAHVMYPSVPPTTRYSPYKVPSSPYSPSTHYSSTPTRIRHHPYGRISSTPLSDSTNIRPESEPVTSTPAVPHKFSVASLL KDTGSSPKVS |
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