Gene
| Gene Model ID | pfu_aug1.0_6132.1_23956 |
|---|---|
| Locus | scaffold6132.1 : 45416 ... 59976 : + |
| To GenomeBrowser | scaffold6132.1:45416..59976 |
| Genes list of scaffold | scaffold6132.1 |
| Synonym | pfu_aug2.0_1046.1_21370 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6132.1_23956.t1 | 4 | 1 | Laminin_G_2 | 93 | 135 | 1.2e-32 | 112.6 | 1.6e-07 | 0.00058 | 19.9 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 1 | Laminin_G_1 | 94 | 132 | 1.6e-29 | 102.5 | 9.7e-08 | 0.00036 | 20.5 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 2 | Laminin_G_2 | 189 | 273 | 1.2e-32 | 112.6 | 1.4e-17 | 5.2e-14 | 52.3 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 2 | Laminin_G_1 | 197 | 277 | 1.6e-29 | 102.5 | 2.9e-15 | 1.1e-11 | 44.8 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 3 | Laminin_G_2 | 376 | 420 | 1.2e-32 | 112.6 | 9.5e-12 | 3.5e-08 | 33.5 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 3 | Laminin_G_1 | 376 | 421 | 1.6e-29 | 102.5 | 6.6e-11 | 2.5e-07 | 30.7 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 4 | Laminin_G_2 | 424 | 446 | 1.2e-32 | 112.6 | 0.007 | 26.0 | 4.8 |
| pfu_aug1.0_6132.1_23956.t1 | 4 | 4 | Laminin_G_1 | 433 | 447 | 1.6e-29 | 102.5 | 0.085 | 310.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6132.1_23956.t1 | gi|348569078|ref|XP_003470325.1| | PREDICTED: pikachurin isoform X1 [Cavia porcellus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6132.1_23956.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6132.1_23956.t1 atgaccgccgagggctccgattgtctgacgcattttcgacttctcctctgcaatggctgcacaatgttcgcaaaacctta caggaaccaagtactcgtgatcctctacatagtttttgtgccgattggcttacagggcctacaccgaattgtccactatc attcttttgtttgcaattcagatatacatgtgaagtatccaaagtttcatggtgatgggtaccttgctttaccagtactg agacacgcccacaaagaatttgacatactaatagaattcaaaccacgtgattggaatggcctcctgctgtatacggccga aagggaggaggggaagggagactacttctctatagctttagtcaacggatttatagtttataggtattcatttactttcc ttcaggagagtgcagtgaagacgtatgcaaaggagtgttctgtcaaaatggaggtacatgcgtccctaagtcagctgata tttatgtgtgtctctgtccacttggttcgtcaggtaaccattgtcaagaaggtgttttatgtttcatatgtgtccagttt tcttgacatagtaccgagttttgagccgctggtcttggaccaatggcactgggtacaggtctcccgtactgggatgcagg gggtgatggaaatagacaaacaacatcgcgtggaggggctgtcccaaggggcgttcacccagctgaccctcactcaggat ctccttattggtggacatcacaactttgacgaaacgtccaaactggccaatctgacgtcatcatttcaaggatgcattca gagtataattatcaacgacaaagaactagacttggtagacgatgcagactttggggtgaacatagagccttgtgaccacc catgtgccggggatccatgtttgaactctgggcagtgtcttcccgacaaggagttttatacttgttcatgcccattgggc tttggaggttcaaattgtcaaaacgctttagatacaaatcttgttattgcagaaatacgggagcctgttcgtgtaccatc ctttaacggacatggttatctagtgtattcagatgatgatgttggaaaaaggctatctggacccgtcactgatatccaga tgagatttcggaccactagtcccgcgggattgttgttttggaccggtcaaaatacgtccgtctcggccccctcggacttt ttggcccttggttttactgatggagctctacagttcagatataacctgggtggcggtggtgctctggatacatctttact gacatttggaaaattcttaactggttttgctggatgtataagtgatgtaaaattggcggaggaatacaacataaacttgg tgaaaggtgctcactccggaagaaatattcagtcatgtgacatcacgtaa |
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Protein
| Protein ID | pfu_aug1.0_6132.1_23956.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6132.1_23956.t1 MTAEGSDCLTHFRLLLCNGCTMFAKPYRNQVLVILYIVFVPIGLQGLHRIVHYHSFVCNSDIHVKYPKFHGDGYLALPVL RHAHKEFDILIEFKPRDWNGLLLYTAEREEGKGDYFSIALVNGFIVYRYSFTFLQESAVKTYAKECSVKMEVHASLSQLI FMCVSVHLVRQVTIVKKVFYVSYVSSFLDIVPSFEPLVLDQWHWVQVSRTGMQGVMEIDKQHRVEGLSQGAFTQLTLTQD LLIGGHHNFDETSKLANLTSSFQGCIQSIIINDKELDLVDDADFGVNIEPCDHPCAGDPCLNSGQCLPDKEFYTCSCPLG FGGSNCQNALDTNLVIAEIREPVRVPSFNGHGYLVYSDDDVGKRLSGPVTDIQMRFRTTSPAGLLFWTGQNTSVSAPSDF LALGFTDGALQFRYNLGGGGALDTSLLTFGKFLTGFAGCISDVKLAEEYNINLVKGAHSGRNIQSCDIT |
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