Gene
| Gene Model ID | pfu_aug1.0_6143.1_45358 |
|---|---|
| Locus | scaffold6143.1 : 31505 ... 47225 : - |
| To GenomeBrowser | scaffold6143.1:31505..47225 |
| Genes list of scaffold | scaffold6143.1 |
| Synonym | pfu_aug2.0_374.1_14066 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6143.1_45358.t1 | 1 | 1 | MM_CoA_mutase | 1 | 391 | 0.0 | 650.9 | 0.0 | 0.0 | 650.7 |
| pfu_aug1.0_6143.1_45358.t1 | 2 | 1 | B12-binding | 288 | 303 | 2.0e-07 | 30.8 | 0.37 | 2700.0 | -1.9 |
| pfu_aug1.0_6143.1_45358.t1 | 2 | 2 | B12-binding | 431 | 507 | 2.0e-07 | 30.8 | 1.2e-10 | 9.1e-07 | 28.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6143.1_45358.t1 | gi|149633461|ref|XP_001510860.1| | PREDICTED: methylmalonyl-CoA mutase, mitochondrial [Ornithorhynchus anatinus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_6143.1_45358.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6143.1_45358.t1 atgacgatgaacggtgcggtattaccagtcatggctatgtatatagtagcagcagaggaacagggtgctaagcaggcaga attagccggtactatacagaatgatatacttaaggagtttatggtcaggaacacgtacatattccctccagagccgtcca tgaaggtcatcggtgatatatttgaatacacatccaagaacatgcctaagtttaattcgatttcaatctctggttaccac atgcaagaagctggtgctgatgccatattagagcttgcctttactttggctgacggattacagtacatcagaactggtat agagagaggtttggatgtggacaagtttgctcccagactctccttcttctggggtattggtatgaacttttacatggaaa ttgccaagctgagggctgccaggaggttatgggcgaatcttgtaaaggaaaaattccagcccaaaaatcctaaatcttta ttacttagagctcatagtcaaacttcaggatggtcactcacagaacaggatgcctataacaacattgtacgtacagcgat agaggccatggcggccgtatttggaggtacacaatctctacacactaactcgtttgacgaggcgttaggactacccacac cgtttagcgctcgcatcgccagaaatactcagcttattctgcaggaggagtcaggaataccaaacgtggcagatccatgg ggtggatcatacttgatggagagtctgaccaatgatatctatgatgctgctcttaaagtcattaatgagatagaggagat gggaggcatggctaaggccgtagcatcaggaatgcctaagttacgtatagaggaatgtgctgctagacgacaggccagga ttgataacggagcagaggtgatagtgggcgtgaacaaataccgacccacggaggagcacgctgttgacgtactatgtata gacaatactaaggtccgacagcagcagatagaaaggctccaaaaagtacgagcctccagagatgaggccaaggctaacaa gtgtctggaagctataactaaatgctgtcagactaaagatgggaacctgttaggtctgagtatagaagctgcccgggcta gatgtactgttggagagattactaatgccatggaaaaggtttatggtagacatgtagctagtgacagattggttagcggt gcttacaaaacagaatacggagaggtggaagaaatagacaaagtcatcaagagggttgagaaatttgccgaggaggaagg gagacgacctaggattctggttgctaaggtcggacaagatggtcacgacagagggggcaaggtcatcgctacgggattcg ctgaccttggatttgatgttgatatcgggcctctttttgcgacaccaaaggaggcggctcaacaggctgtcgatgctgac gttcatgttttaggagttagctcccttgctgccggacacagaacgcttattcctgaaatggtggaagaactcaaaaaaga tgggacgaggtga |
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Protein
| Protein ID | pfu_aug1.0_6143.1_45358.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6143.1_45358.t1 MTMNGAVLPVMAMYIVAAEEQGAKQAELAGTIQNDILKEFMVRNTYIFPPEPSMKVIGDIFEYTSKNMPKFNSISISGYH MQEAGADAILELAFTLADGLQYIRTGIERGLDVDKFAPRLSFFWGIGMNFYMEIAKLRAARRLWANLVKEKFQPKNPKSL LLRAHSQTSGWSLTEQDAYNNIVRTAIEAMAAVFGGTQSLHTNSFDEALGLPTPFSARIARNTQLILQEESGIPNVADPW GGSYLMESLTNDIYDAALKVINEIEEMGGMAKAVASGMPKLRIEECAARRQARIDNGAEVIVGVNKYRPTEEHAVDVLCI DNTKVRQQQIERLQKVRASRDEAKANKCLEAITKCCQTKDGNLLGLSIEAARARCTVGEITNAMEKVYGRHVASDRLVSG AYKTEYGEVEEIDKVIKRVEKFAEEEGRRPRILVAKVGQDGHDRGGKVIATGFADLGFDVDIGPLFATPKEAAQQAVDAD VHVLGVSSLAAGHRTLIPEMVEELKKDGTR |
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