Gene
| Gene Model ID | pfu_aug1.0_6169.1_23963 |
|---|---|
| Locus | scaffold6169.1 : 30930 ... 36615 : - |
| To GenomeBrowser | scaffold6169.1:30930..36615 |
| Genes list of scaffold | scaffold6169.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6169.1_23963.t1 | 1 | 1 | CDT1 | 1 | 129 | 3.4e-34 | 118.1 | 2.7e-38 | 4.0e-34 | 117.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6169.1_23963.t1 | gi|301608266|ref|XP_002933700.1| | PREDICTED: DNA replication factor Cdt1 [Xenopus (Silurana) tropicalis] | 3.00018e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6169.1_23963.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6169.1_23963.t1 atgaccaaaaggaattttgaagagaagaatgttggacagattaagacagtgtacccttcagcctacacttacagacaaga gaaaggactgccggcattcggtaataaagtgacaggataccagctcacaatggaaccaaatctctcaccagatgatgaga gtaagttgatgacaaagaacggaaatacaatgttttcagccaagcatctcctggagagaagaagcacattccacaacaag ctgatcaccatcgtcaaaaaataccacaaggaattccttgccagtcttgatcgcccactgtcggtacctgacgacaaaat cacgagatggcatcccaaattcaatgtggacactgttcctgatgtaaaacctgatgatctgcctcagcctccgaccgtga agaaataccatacggctaaagatgtcctagaggataccaggggaaagcttcctagcagggtaaatgtttctacataa |
|
Protein
| Protein ID | pfu_aug1.0_6169.1_23963.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6169.1_23963.t1 MTKRNFEEKNVGQIKTVYPSAYTYRQEKGLPAFGNKVTGYQLTMEPNLSPDDESKLMTKNGNTMFSAKHLLERRSTFHNK LITIVKKYHKEFLASLDRPLSVPDDKITRWHPKFNVDTVPDVKPDDLPQPPTVKKYHTAKDVLEDTRGKLPSRVNVST |
|