Gene
| Gene Model ID | pfu_aug1.0_6187.1_45381 |
|---|---|
| Locus | scaffold6187.1 : 1 ... 17354 : + |
| To GenomeBrowser | scaffold6187.1:1..17354 |
| Genes list of scaffold | scaffold6187.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6187.1_45381.t1 | 1 | 1 | HATPase_c_3 | 10 | 87 | 6.9e-06 | 25.7 | 2.9e-09 | 1.5e-05 | 24.7 |
| pfu_aug1.0_6187.1_45381.t1 | 1 | 1 | MutL_C | 96 | 170 | 6.5e-19 | 67.9 | 2.2e-22 | 1.1e-18 | 67.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6187.1_45381.t1 | gi|301604746|ref|XP_002932025.1| | PREDICTED: mismatch repair endonuclease PMS2 [Xenopus (Silurana) tropicalis] | 3.0e-36 |
Transcript
| Transcript ID | pfu_aug1.0_6187.1_45381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6187.1_45381.t1 atgtaagacttaaggagtatggcagtgagttaatagaggtcagtgataatggaagtggagtggaagaaaaagattttgaa ggtttaactttaaaacaccacacatcaaagatcaaggacttctcggacgttgtcaatgtagagacgtttggtttccgtgg tgaagcactcagttctctatgtgccctgagctctctttccattgtgactcgccataagacagccaatgtaggaacaaaat tagatattgaccacaatggaaaaattaaagagaaaagttctgtggcaaggcagttcaatttgggatttattatagtcaaa cttggagaagatttgtttatagttgatcaacatgcctcagatgagaagtataactttgaaatgctacagagacacacggt catacagaatcaaaaactcattcagccacagaacctggaacttacagccagcaatgagacaattctgatggataaccttg aagttttcaggaaaaatggatttgactttatcataaatgaagaagtcttcacaaaaagtgacaagagcatatacaagtgt acatgtaatattgcatgcatataccatacatgtgaaccttttgcctccacaaatctggaggattttcaattttcatctgg agatttggcctctcgttgggaggtttttaatttttcatcgggaggatttatcggtattcggaaccccccccctttctttt ttaatctacggacgaattttctcaactcgcttttcaacaaggacagattgcgctctcataaaacaacaaaaacaattcag agttccaagaattgtctcaatgacgtctgttga |
|
Protein
| Protein ID | pfu_aug1.0_6187.1_45381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6187.1_45381.t1 VRLKEYGSELIEVSDNGSGVEEKDFEGLTLKHHTSKIKDFSDVVNVETFGFRGEALSSLCALSSLSIVTRHKTANVGTKL DIDHNGKIKEKSSVARQFNLGFIIVKLGEDLFIVDQHASDEKYNFEMLQRHTVIQNQKLIQPQNLELTASNETILMDNLE VFRKNGFDFIINEEVFTKSDKSIYKCTCNIACIYHTCEPFASTNLEDFQFSSGDLASRWEVFNFSSGGFIGIRNPPPFFF NLRTNFLNSLFNKDRLRSHKTTKTIQSSKNCLNDVC |
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