Gene
| Gene Model ID | pfu_aug1.0_6191.1_52725 |
|---|---|
| Locus | scaffold6191.1 : 9116 ... 15972 : + |
| To GenomeBrowser | scaffold6191.1:9116..15972 |
| Genes list of scaffold | scaffold6191.1 |
| Synonym | pfu_aug2.0_504.1_14237 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6191.1_52725.t1 | 6 | 1 | WD40 | 3 | 19 | 7.4e-30 | 101.7 | 1.1e-05 | 0.17 | 11.8 |
| pfu_aug1.0_6191.1_52725.t1 | 6 | 2 | WD40 | 28 | 63 | 7.4e-30 | 101.7 | 3.9e-09 | 5.7e-05 | 22.8 |
| pfu_aug1.0_6191.1_52725.t1 | 6 | 3 | WD40 | 63 | 71 | 7.4e-30 | 101.7 | 0.055 | 810.0 | 0.1 |
| pfu_aug1.0_6191.1_52725.t1 | 6 | 4 | WD40 | 72 | 124 | 7.4e-30 | 101.7 | 2.5e-12 | 3.6e-08 | 32.9 |
| pfu_aug1.0_6191.1_52725.t1 | 6 | 5 | WD40 | 135 | 172 | 7.4e-30 | 101.7 | 3.0e-12 | 4.5e-08 | 32.6 |
| pfu_aug1.0_6191.1_52725.t1 | 6 | 6 | WD40 | 191 | 218 | 7.4e-30 | 101.7 | 8.2e-08 | 0.0012 | 18.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6191.1_52725.t1 | gi|45360589|ref|NP_988967.1| | protein SEC13 homolog [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6191.1_52725.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6191.1_52725.t1 atgtttggtagtattttggcttcctgtgggtatgataggaaagtcgtcatatggaaggaaaataacggctcctggggaaa actgtatgaatatctgagtcatgactcttcagtaaattcagttcaatttgcgtctcaagaatttggtcttattttggctt gtggaagctcggatggcagcatttcaattatttctagttcaggtgatggaacttgggacgccaagaaaataactaatgca catacgattggatgtaacgctgtgagttgggcccctgccgtgtcaccgagtgccctatttgacctctctggcagaagtca gccgacaaagcgactggtctccgggggctgcgataatctagtcaaaatatggagggaggaagatggaaagtggatagagg ataagaagttagagggacacagtgactgggtcagggacgtagcctgggcaccaagtataggtctacctaccagtatcata gctagttgttcacaagatttccgagtcataatctggacaaatgatggcagcagtaacgagtggaattctcaacttttaca caaatttaacgatgttgtttggcatcttagctggtctataacaggaaatatcctggcatgctcagggggagataacaaag ttagtttgtggaaagaaaatcttgaaggtcagtggatgtgtatcagcgatgtcaacaaaggtcaaggtcaaattacagat ggacagcggtcatccagctaa |
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Protein
| Protein ID | pfu_aug1.0_6191.1_52725.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6191.1_52725.t1 MFGSILASCGYDRKVVIWKENNGSWGKLYEYLSHDSSVNSVQFASQEFGLILACGSSDGSISIISSSGDGTWDAKKITNA HTIGCNAVSWAPAVSPSALFDLSGRSQPTKRLVSGGCDNLVKIWREEDGKWIEDKKLEGHSDWVRDVAWAPSIGLPTSII ASCSQDFRVIIWTNDGSSNEWNSQLLHKFNDVVWHLSWSITGNILACSGGDNKVSLWKENLEGQWMCISDVNKGQGQITD GQRSSS |
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