Gene
| Gene Model ID | pfu_aug1.0_62.1_14761 |
|---|---|
| Locus | scaffold62.1 : 209136 ... 231341 : + |
| To GenomeBrowser | scaffold62.1:209136..231341 |
| Genes list of scaffold | scaffold62.1 |
| Synonym | pfu_aug2.0_340.1_00636 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_62.1_14761.t1 | 1 | 1 | PCI_Csn8 | 40 | 174 | 2.0e-36 | 124.8 | 5.30001e-40 | 2.6e-36 | 124.5 |
| pfu_aug1.0_62.1_14761.t1 | 1 | 1 | SAC3_GANP | 49 | 144 | 5.0e-06 | 26.2 | 1.3e-09 | 6.5e-06 | 25.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_62.1_14761.t1 | gi|225707188|gb|ACO09440.1| | COP9 signalosome complex subunit 8 [Osmerus mordax] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| maleGonad | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_62.1_14761.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_62.1_14761.t1 atgcaccctactttcactttaacgtataccatgaataacgacacgggtgtagatttttgcaaattacagaacgatttaga agcacaggaacttgaggcccctggtggggtaggcagtcctcagctatacagtcaactcctggcattgtatcttcttcaca atgaaacgtgtaatgcaaaattcttgtggaagaggataccacaagcaacaaaaagtacaacaccagagctagctacgata tggaacattggccagaaactctggctgcgggattatccgggtatttacgaaggtctgaagaaagaatggagtgaacatgt caaattcatcatggatgcacttgttgattccacacgcagaagggctgcagaaattgttgcaagagcgtactcatcaataa acgaggaagatttagctgcttttctgggtatgagtgcgtcagaggcagttcagactgcagtttccgagggatggcaatac gatgctcagacaaagtttgttacgcccaaaaagattgctccaccctctgaccccatcatactgagtgaacagcagttatc ggtgctgactgattatgtgtcgttccttgaaggatga |
|
Protein
| Protein ID | pfu_aug1.0_62.1_14761.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_62.1_14761.t1 MHPTFTLTYTMNNDTGVDFCKLQNDLEAQELEAPGGVGSPQLYSQLLALYLLHNETCNAKFLWKRIPQATKSTTPELATI WNIGQKLWLRDYPGIYEGLKKEWSEHVKFIMDALVDSTRRRAAEIVARAYSSINEEDLAAFLGMSASEAVQTAVSEGWQY DAQTKFVTPKKIAPPSDPIILSEQQLSVLTDYVSFLEG |
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