Gene
| Gene Model ID | pfu_aug1.0_62230.1_70938 |
|---|---|
| Locus | scaffold62230.1 : 1636 ... 3919 : + |
| To GenomeBrowser | scaffold62230.1:1636..3919 |
| Genes list of scaffold | scaffold62230.1 |
| Synonym | pfu_aug2.0_8504.1_16328 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_62230.1_70938.t1 | 2 | 1 | EF-hand_1 | 1 | 19 | 8.6e-12 | 43.4 | 0.00026 | 0.55 | 9.6 |
| pfu_aug1.0_62230.1_70938.t1 | 2 | 1 | EF-hand_6 | 1 | 20 | 2.3e-09 | 36.3 | 0.00064 | 1.4 | 9.0 |
| pfu_aug1.0_62230.1_70938.t1 | 1 | 1 | EF-hand_7 | 1 | 51 | 2.3e-08 | 34.0 | 2.2e-11 | 4.8e-08 | 33.0 |
| pfu_aug1.0_62230.1_70938.t1 | 2 | 1 | EF-hand_5 | 8 | 18 | 1.3e-06 | 27.4 | 0.044 | 94.0 | 2.6 |
| pfu_aug1.0_62230.1_70938.t1 | 1 | 1 | EF-hand_8 | 10 | 51 | 8.1e-07 | 28.5 | 4.5e-10 | 9.6e-07 | 28.3 |
| pfu_aug1.0_62230.1_70938.t1 | 2 | 2 | EF-hand_1 | 30 | 55 | 8.6e-12 | 43.4 | 4.6e-12 | 9.8e-09 | 33.8 |
| pfu_aug1.0_62230.1_70938.t1 | 2 | 2 | EF-hand_6 | 31 | 55 | 2.3e-09 | 36.3 | 7.3e-10 | 1.6e-06 | 27.5 |
| pfu_aug1.0_62230.1_70938.t1 | 2 | 2 | EF-hand_5 | 32 | 50 | 1.3e-06 | 27.4 | 1.1e-09 | 2.2e-06 | 26.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_62230.1_70938.t1 | gi|313224259|emb|CBY20048.1| | unnamed protein product [Oikopleura dioica] | 7.0e-11 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 2 |
Transcript
| Transcript ID | pfu_aug1.0_62230.1_70938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_62230.1_70938.t1 atggatgatgatagtgatcggagtctcagcattagcgaattcaagaaaggtttacacgattatggagtggatgtggaagg caatgtagcacaagaaatatttagtagaattgacaaggatggcagtggccaattatcttttgatgaatttttgatggcat taagg |
|
Protein
| Protein ID | pfu_aug1.0_62230.1_70938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_62230.1_70938.t1 MDDDSDRSLSISEFKKGLHDYGVDVEGNVAQEIFSRIDKDGSGQLSFDEFLMALR |
|