Gene
| Gene Model ID | pfu_aug1.0_6225.1_67396 |
|---|---|
| Locus | scaffold6225.1 : 6136 ... 13593 : + |
| To GenomeBrowser | scaffold6225.1:6136..13593 |
| Genes list of scaffold | scaffold6225.1 |
| Synonym | pfu_aug2.0_784.1_14558 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6225.1_67396.t1 | 5 | 1 | Cadherin_2 | 2 | 84 | 1.8e-10 | 40.2 | 7.2e-11 | 3.6e-07 | 29.6 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 1 | Cadherin | 31 | 71 | 0.0 | 309.8 | 7.6e-06 | 0.038 | 14.2 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 2 | Cadherin | 118 | 211 | 0.0 | 309.8 | 2.7e-13 | 1.3e-09 | 38.1 |
| pfu_aug1.0_6225.1_67396.t1 | 5 | 2 | Cadherin_2 | 169 | 182 | 1.8e-10 | 40.2 | 0.1 | 510.0 | 0.3 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 3 | Cadherin | 225 | 319 | 0.0 | 309.8 | 2.4e-20 | 1.2e-16 | 60.7 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 4 | Cadherin | 342 | 427 | 0.0 | 309.8 | 1.1e-13 | 5.3e-10 | 39.4 |
| pfu_aug1.0_6225.1_67396.t1 | 5 | 3 | Cadherin_2 | 344 | 358 | 1.8e-10 | 40.2 | 0.22 | 1100.0 | -0.8 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 5 | Cadherin | 444 | 533 | 0.0 | 309.8 | 1.9e-15 | 9.5e-12 | 45.0 |
| pfu_aug1.0_6225.1_67396.t1 | 5 | 4 | Cadherin_2 | 481 | 505 | 1.8e-10 | 40.2 | 0.12 | 610.0 | 0.0 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 6 | Cadherin | 548 | 637 | 0.0 | 309.8 | 5.6e-25 | 2.7e-21 | 75.5 |
| pfu_aug1.0_6225.1_67396.t1 | 5 | 5 | Cadherin_2 | 549 | 567 | 1.8e-10 | 40.2 | 0.063 | 310.0 | 1.0 |
| pfu_aug1.0_6225.1_67396.t1 | 7 | 7 | Cadherin | 657 | 742 | 0.0 | 309.8 | 1.5e-13 | 7.5e-10 | 38.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6225.1_67396.t1 | gi|260832852|ref|XP_002611371.1| | hypothetical protein BRAFLDRAFT_73233 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6225.1_67396.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6225.1_67396.t1 atggatgaagaaaatgaccaagaccatattctggggaacgtatcgcaggatgcaaatttaagggaccttcttggacccgc ggacaatcttaccgacttaaggtacaccatccttactacggggaatcaagtggcgtctttgttcactattgacggtaaga cgagtactttgtcaacaaatcaggttcttgaccgggatacattgtgtcagtatgatcctgtttgcattttgaaatttgat gttgttgcaaagtcagaagttacggacttctttcataaaataacagtttctgtgacgctaaaagacataaatgataatac tccagagtttccagatcccgtcgtcgaggttcctctggcggaaaattctgtcatcggcacagaaacgccgctggcaggtg cgatagacctggactctgggaacaattctgtccaagcctacaggatatttccggaaagtgtgcctttcatcatcaatgaa gaattctatcccgatggaagatcgacactgcgcctcgttgtttcaagaaaattggacagggaaactgaagataggtatag atttaagattttggcattggacagaggaaatcctgtcaaaacgggttctgtaataattgatgtaaatgttttggatatca acgacaacccgcctaattttgaaaaagatatttataacatctctattgctgaggatttccctctgaacaccatgattctt agagtaaaagctctagatagcgatatcggcgagaacggagaagtcttctatcgacttagtcaacgacaaaacgacgaaat acgtcgcattttctatattcatccgacatccggggaactgagtctcatgacgtcattgataacggagagtcgtcctacgt acacggtgatcgtagaggcatctgataacgcttcagcaccgctcatatcgcaggctcaaattctcgtaaccgtgttggac acgcataacgcgcaacccgctattaaaactacactcttctttacacaaaacaactcaaatttcatacatattgtcgaaaa tgtgaaaaatggtacagttatagcatcgatatctgccgtggaccctgacaaaggtttaaacggccaggtggattgtgtct ccaatgactcagactttcgtttatggaaagttgagacaaacgggtataccttggctgtatttgggaaattaaaccgtgaa ttgtcagagaaacataatatcaagatccagtgtacagataaaggagctcccccgaaaagtgcgtttgaaattatcacggt tatacttactgatgtcaatgataacgcaccaaaattcacgcaagatgtctaccgcgttgaaaagccggaaaatgagccca acagcagtatattccaggttatagcaaacgattccgacattacaccgacgtctataacttattttataagtaataccagc gatgcggttgaaaatttctatgtagatagttcctccgggattgtctataataaaagacctcttgaccgggagctatcatc attcatcagcattcctgtagttgctagggacaacaagcctccttttcataccggaagtgccattctggaagtaatcgttc tagatgtcaatgacaatgcaccatattttctccatgataaatataattttagtctgttagaaaaccaacccacaaatact ttcgtaggaaaagtctttgctgaagacaaagacgaaggcaagaatgccgaggttaccttttctgctcaaaatattaatga tttaccatttagaatattctcaaacggctctatttttacaacaaggccgttggacagagaagcatctgcccagtatacga taagtgtagtggccagagatcgtggtagtccggccttgtccaatgttactaatgtgacagtgtcagtcctggacgtcaat gataatagtcccaaaatccatgttcaagaggtactccgtatatctcagtttacgccagcaaatactcagttctttgtcat caatgcaacagacgatgattttgaaacgaattctcagttaatttatgacattgaggaccagagtaacgtctcaaaaatta tatcaatcaacaaactacaagggcagctaagacttgtgagaagtctgacgtctgacgacgtcggacaatacaaatgtgtt gtcatagtgacagatatgggtaattcaccccgaacttcctctgcttcttttaccattttcgtcacacgtgacgacatctc tacgcaaaaatatacctcagaggccgccattaagtattacgccattgctgtggcgatctgttgtgttactatagtgcttt cgtctgtgataattctagtcatttgtctcattcgccgaaaagatcgtctggagggagataaaacgaacagcagtattacg tcacaagtgacgcaagactctgatctaagtcaaatggacatgcgtattaacgacacttatagtacagactatgtgccagg aacgttgatgaagagtttcagtggcggtaaaaagaaagagaaacaatttgaagaggaggattccgatgagactccaccgg aagtaatttcagaagacgtcacaatttgggactggaaccaaccttatacgcatgcgtacagatcgcttgatcaatactcc ccggatgaacccccaaatatttacggcatggatcagaagaactatatgggcccaaatgtggtaagactttgtacttttac aacttgtgcatgtttgatcattttgctcgccaagattccggatactttcaagtaa |
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Protein
| Protein ID | pfu_aug1.0_6225.1_67396.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6225.1_67396.t1 MDEENDQDHILGNVSQDANLRDLLGPADNLTDLRYTILTTGNQVASLFTIDGKTSTLSTNQVLDRDTLCQYDPVCILKFD VVAKSEVTDFFHKITVSVTLKDINDNTPEFPDPVVEVPLAENSVIGTETPLAGAIDLDSGNNSVQAYRIFPESVPFIINE EFYPDGRSTLRLVVSRKLDRETEDRYRFKILALDRGNPVKTGSVIIDVNVLDINDNPPNFEKDIYNISIAEDFPLNTMIL RVKALDSDIGENGEVFYRLSQRQNDEIRRIFYIHPTSGELSLMTSLITESRPTYTVIVEASDNASAPLISQAQILVTVLD THNAQPAIKTTLFFTQNNSNFIHIVENVKNGTVIASISAVDPDKGLNGQVDCVSNDSDFRLWKVETNGYTLAVFGKLNRE LSEKHNIKIQCTDKGAPPKSAFEIITVILTDVNDNAPKFTQDVYRVEKPENEPNSSIFQVIANDSDITPTSITYFISNTS DAVENFYVDSSSGIVYNKRPLDRELSSFISIPVVARDNKPPFHTGSAILEVIVLDVNDNAPYFLHDKYNFSLLENQPTNT FVGKVFAEDKDEGKNAEVTFSAQNINDLPFRIFSNGSIFTTRPLDREASAQYTISVVARDRGSPALSNVTNVTVSVLDVN DNSPKIHVQEVLRISQFTPANTQFFVINATDDDFETNSQLIYDIEDQSNVSKIISINKLQGQLRLVRSLTSDDVGQYKCV VIVTDMGNSPRTSSASFTIFVTRDDISTQKYTSEAAIKYYAIAVAICCVTIVLSSVIILVICLIRRKDRLEGDKTNSSIT SQVTQDSDLSQMDMRINDTYSTDYVPGTLMKSFSGGKKKEKQFEEEDSDETPPEVISEDVTIWDWNQPYTHAYRSLDQYS PDEPPNIYGMDQKNYMGPNVVRLCTFTTCACLIILLAKIPDTFK |
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