Gene
| Gene Model ID | pfu_aug1.0_6251.1_23985 |
|---|---|
| Locus | scaffold6251.1 : 27796 ... 45793 : - |
| To GenomeBrowser | scaffold6251.1:27796..45793 |
| Genes list of scaffold | scaffold6251.1 |
| Synonym | pfu_aug2.0_2374.1_15504 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | myosin heavy chain |
| Description | Myosin heavy chain partial sequence. BLAST top hit to AJ249991 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6251.1_23985.t1 | 2 | 1 | Myosin_head | 2 | 295 | 0.0 | 356.4 | 0.0 | 0.0 | 356.4 |
| pfu_aug1.0_6251.1_23985.t1 | 3 | 1 | Myosin_tail_1 | 372 | 517 | 0.0 | 515.8 | 0.0075 | 28.0 | 2.2 |
| pfu_aug1.0_6251.1_23985.t1 | 3 | 2 | Myosin_tail_1 | 549 | 866 | 0.0 | 515.8 | 0.0 | 0.0 | 384.8 |
| pfu_aug1.0_6251.1_23985.t1 | 2 | 2 | Myosin_head | 708 | 738 | 0.0 | 356.4 | 0.49 | 1800.0 | -3.5 |
| pfu_aug1.0_6251.1_23985.t1 | 3 | 3 | Myosin_tail_1 | 1526 | 1633 | 0.0 | 515.8 | 1.26117e-44 | 4.60004e-41 | 140.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 10 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6251.1_23985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6251.1_23985.t1 ttcaacagctttgagcagctctgcatcaattacaccaacgagcgtctccaacagttcttcaaccatcacatgttcgtatt ggagcaagaagaatacaagaaagaaggaatcgagtgggaatttattgatttcggcatggacttgcaagcttgcattgagc ttattgagaagcctatgggtatcctgtccatccttgaggaagaatgcatgttccccaaagcctcggacaaatctctgaag gagaaactgtacaccaatcacatgggcaagtcagctaactttggcaaacccggaaaagccccacgttccggagtccccgc ccctgacttcactctcttccactacgccggaagtgtgggatacaacatttccaactggctagagaagaacaaggatccta tcaatgagaacgtagtagccctcttatctgaatccaaggaacacttggtggccagtctctttgctgcacctgctgaggct gatacaggtggcgctaagaagaagaagaagtcatctgctttccagactatctcggctgtacacagggaatccttgaacaa gctaatgaagaacttgtacagtacacatcctcatttcgtacgttgtctgatccccaacgagttgaagcagtccggattga tcgatgccgccttggtcatgaaccagctccagtgtaacggcgtacttgagggtatccgtatctgtcgtaaaggatttccc agcagagtactgtatgctgagttcaaacagagatactccatcttggctccaaatgctatcccacaaggctttgctgaagg caaaattgtagctgagaaggttcttttggctctccagctcgaccccgcagagtacaaacttggatccaccaaagttttct tcaaggccggtgtcctgggtatgcttgaggaactacgtgaagagaaactgtccaagatcattaccaacttccaggctcac atcagaggatatatccagaggaagaactataagaaactgcaagatcagagaactgctctctcaatcatccagaagaacat ccgtaaatggttggtcctgaagggatggcagtggtggaaactctacgcaaaggtcaagcccatgttgaacattgcccgtc aagaagaggaaatgaagaggaaactggaagaaatggagaagatggcagaagacctgaagaaaactgagaagatgaggaaa gaattggaagaacagaatgtcctcctggccagacaaaaggaagatatttacctagaactgcaaacccaacaagacgctat gtctgatgctgaaacaagaattgaacaacttatcaaccagaaagtagaacacgaggctcaggccgagaatgaaaagatca cacgcgacaaccagatcaagactcttaatgatgaaatggccaacatggaccagcagatcgccaaactgggcaaagacaag aaggctatggatgaagcccacaaagccacacaaggtgaactggccaaggaacaagagaaatgcaatggactcaacaaact caagcagaaacttgaatcaactctcgatgagaaaattatttgtaaattgactcaaatcatgaagaccctattaataagtg taaagaaggattcatcctattacgattttcgatacattagaaaggaaactcgacgccgcgttcagaacaaactgaacgag acagaacagcttctggaggctgctaatgttaagatcagtcaactggagaaggccaagatgaggatgggccaggaaatgga agacctggttattgaagtagaaaggcaaaccaccactgctaataaccttgagagaaagcagcgttccttcgacaagacca tcgacgaatggaaggccaaggttaaggagcttgaggctgatgtagaccgcgtcaacagggaatctaggaacttctccacc gagcttttccgtgcaaaggctcagtatgaggagtctcaagataccattgaatcactccgccgcgagaacaagaacctctc agatgagatccacgagttgactgaccagctctcagagggaggccgcagtgtacacgaggtagagaaagccaagcgccgtc tggaattggagaaagaggagctacaagctgctctggaagaggcagagagcgccctcgaatcggaagaggctaaagtaatg cgggcgcagatggaagtcgccggtattcgttccgagattgagaaacgcatccatgagaaagaagaggaatttgagagcac acgtcgcaaccaccagagagccatggaatctatgcagactagcctagaggctgagtcaaagggcaaggccgaggctcaga ggataaagaagaaactggagtctgatgtcagtgaactggaagtgtctctagatggcgccaacagagcacgcgctgaaatg gacaagaccgttaaaagataccaacttcaagtcaaggagatccagactgccttcgaggatgaacagaggaagacacagga agcaattgagatctcggccacattcgagagacgtgttgctatgctcagcggagagacagatgaaattcgttcatcattgg acaatgccgagagagcccgcaaaatggccgagaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 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nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgccaaggatggaaatcaccacgagacgacttactca aaaatcgtatggtctggcccatgggagaagagttagacagccacaattatgtacttgtcattgtctccttgatgtttgtg cagaggaaatattttataagagaactagaatccgagcttgacagcgaacaaagacgccatgctgagacgcaaaagaacgc acgtaaatctgaccgcagaattaaggaattggcgttccaatgtgacgaggaacgcaagaacctggagcgttgtcaagaga tgattgacaaactttctgagaaggtcaacgtgtacaagaggcaggtcgaagaagcggaagaaattgccgccatgaacctc gccaaatatcgcaaagttcagcacgagcttgaagacgcggaggaacgagctgagactgctgagagcacgatgaccaagct caggtcgcgtagccgcagcacaatgtcaagtatccatgtgacatcgacttcttcatcatag |
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Protein
| Protein ID | pfu_aug1.0_6251.1_23985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6251.1_23985.t1 FNSFEQLCINYTNERLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACIELIEKPMGILSILEEECMFPKASDKSLK EKLYTNHMGKSANFGKPGKAPRSGVPAPDFTLFHYAGSVGYNISNWLEKNKDPINENVVALLSESKEHLVASLFAAPAEA DTGGAKKKKKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCLIPNELKQSGLIDAALVMNQLQCNGVLEGIRICRKGFP SRVLYAEFKQRYSILAPNAIPQGFAEGKIVAEKVLLALQLDPAEYKLGSTKVFFKAGVLGMLEELREEKLSKIITNFQAH IRGYIQRKNYKKLQDQRTALSIIQKNIRKWLVLKGWQWWKLYAKVKPMLNIARQEEEMKRKLEEMEKMAEDLKKTEKMRK ELEEQNVLLARQKEDIYLELQTQQDAMSDAETRIEQLINQKVEHEAQAENEKITRDNQIKTLNDEMANMDQQIAKLGKDK KAMDEAHKATQGELAKEQEKCNGLNKLKQKLESTLDEKIICKLTQIMKTLLISVKKDSSYYDFRYIRKETRRRVQNKLNE TEQLLEAANVKISQLEKAKMRMGQEMEDLVIEVERQTTTANNLERKQRSFDKTIDEWKAKVKELEADVDRVNRESRNFST ELFRAKAQYEESQDTIESLRRENKNLSDEIHELTDQLSEGGRSVHEVEKAKRRLELEKEELQAALEEAESALESEEAKVM RAQMEVAGIRSEIEKRIHEKEEEFESTRRNHQRAMESMQTSLEAESKGKAEAQRIKKKLESDVSELEVSLDGANRARAEM DKTVKRYQLQVKEIQTAFEDEQRKTQEAIEISATFERRVAMLSGETDEIRSSLDNAERARKMAENXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGWKSPRDDLLKNRMVWPMGEELDSHNYVLVIVSLMFV QRKYFIRELESELDSEQRRHAETQKNARKSDRRIKELAFQCDEERKNLERCQEMIDKLSEKVNVYKRQVEEAEEIAAMNL AKYRKVQHELEDAEERAETAESTMTKLRSRSRSTMSSIHVTSTSSS |
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