Gene
| Gene Model ID | pfu_aug1.0_6272.1_59984 |
|---|---|
| Locus | scaffold6272.1 : 1 ... 37490 : + |
| To GenomeBrowser | scaffold6272.1:1..37490 |
| Genes list of scaffold | scaffold6272.1 |
| Synonym | pfu_aug2.0_262.1_07262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6272.1_59984.t1 | 4 | 1 | PKD | 115 | 228 | 2.5e-14 | 52.7 | 0.00023 | 0.84 | 9.4 |
| pfu_aug1.0_6272.1_59984.t1 | 4 | 2 | PKD | 471 | 532 | 2.5e-14 | 52.7 | 0.00017 | 0.62 | 9.8 |
| pfu_aug1.0_6272.1_59984.t1 | 4 | 3 | PKD | 580 | 635 | 2.5e-14 | 52.7 | 0.0052 | 19.0 | 5.0 |
| pfu_aug1.0_6272.1_59984.t1 | 4 | 4 | PKD | 704 | 744 | 2.5e-14 | 52.7 | 4.9e-09 | 1.8e-05 | 24.3 |
| pfu_aug1.0_6272.1_59984.t1 | 2 | 1 | Ion_trans | 1483 | 1502 | 6.3e-09 | 35.3 | 0.53 | 2000.0 | -2.2 |
| pfu_aug1.0_6272.1_59984.t1 | 1 | 1 | PKD_channel | 1582 | 1949 | 0.0 | 208.2 | 0.0 | 0.0 | 208.2 |
| pfu_aug1.0_6272.1_59984.t1 | 2 | 2 | Ion_trans | 1739 | 1942 | 6.3e-09 | 35.3 | 1.7e-12 | 6.3e-09 | 35.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6272.1_59984.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6272.1_59984.t1 acagaaatgcatctgaatttgacatcgacaacaaacaggataatccgatcgttttgtcaagtgaagataaagtaacggtt ctccttgtattttcaaccggagatgtggacctaaatctaacagcggagctcgacaatggtattcacttaaacacatcgaa agctgttatagaccatgaaactggaaacatttcatacactataaatgcatcctacatgaaagaggttgaatttgggagct acaatttgaccttttctctagaaaattcgtccactgttgtcggaacaaaaattgtcccgttcatttatgaggaaccgatc gctggattagacgtcattattcagcggaatgttccagtggacgaggaacaagaatttacaatagctcttttaagtgggtc gaatgtaatgattacatggtcacttgataatgaaacccaggaccttgtatattacaagtctccccgaaacatcataaatg aaccatatgctccaatcgatgcagaacaacaattcaatattaccttctccagaggatcaaatgtgaagatagtatgctta gttgacaatacaactcacgacctcggatttcacacgtctccgcgaaactatcctctaggtgtcatctttacaacatcagg acaccataatgtaactgtaattgcagagaacactgtgtcaagggcggaaaattctgtccatgtcactgcgtattatagac taaatggattcagtgttatagtagaaaacacgacagtttcaactaccgacgatgctgttttcataatatgtctgtctaat gtctctcagttcccgatgggaagcatatccgcaaaagtagtctttggagacggcaatctttcgacagtagatatcaatga aaatattgctcagatgcaaacaatttcttgctaccgcttttctcatcagtattcgattataggcaattacacggctatta tttctatcagatctaaagtagacgcgataacattaggcacatttgaaatggaaatttttgaaaaaggtgtcacaatgttc gatactataccggctgatatgaacgttttttacatgttgcctggggagaatgtgtctttccatttcgaatacgaaactgg agggaactttattaacccggtgaacttctcggcggcaattagtaatggaacattacttgatacgtcttcatctaagctga atacatcaacaaaagagatatttttcacgttagaacacacctccatgatcaaaatcttgatttttgaaatcgcgttttcc aaggaaaaaggtaactacactgcagaaatacttatcagttctgagattgacaaaaaatcgtatgctttcgacatttttgt atgggataacctggcagtgatacttgaagctaaacttgttggcaaagtttttgaaagctttaatttcaccttttcaaatc ctccaccatcaggattcgcttacaatattgattatggcgacggaaattcacattcggagaatgaaagtgtttggtactat gcatatgaagacgctcctcttatacactcatataatgatgatggcgtctaccacgttagtgtttatgcctggaatcaaat cttctcttctttcagtaattttgtaataacaatccaataccccataccacaagaaaacatcacgctatctcctgcatttt acgtgattcctatacctgatggtataatgaacttccacatgaatctgactgaagataatcctcaaccatcaaatgtcacg tgtttgtttgatttccaagatggcgatgaaattgacagggatgtcggacttatttttggttctccagtaaacaaaacatt tgtctacgattttccgggtgaaaaggctgtaaactttacatgttggaacagagtaagctctctgactaaaatgtcaaata taacagtcgtgaactttacattagatcattttgaaataatatatcagtctccggtgaatatgaacacaactctttcaaat gtagtagacctcaattacccaagagacacgcctgttagaaaggtacaacacagtattgtagatgtatatttctatgtgga cctgttacgctgtcataagttaccgccggatatttattttcaatgggattttggagatggtagcgtagaaacggatttgg tacaattcaagaaaattcacacttacacaaaaagaggacactatgaaatcaaagtaacaatattcaacaataaaacaaat gaacacttggaaattgatccctttataattacaatgggaatcatccagttctcggtggaacctgccgatgggattgtttc tttgactgaatttacttttcagtttgaaggatttgaaggaaatacaacttacattttcgtcccacaacaagtattctcta atacttcatttactctcgatgatcacatttttcagtatatatatccgcactggggtcagtttcaacctttcgtgttcgca gataatgggacagttaacgaaattgtttatatggaaacgccagtggaagtcgacttcaacttgacggccctagatataag tgtcaataatggttcagttgatacttatagtattcatctaccaccaggttatttgaaagtaaccatctcagtgtcgaaat atactagaatgccttacacaacatgtgatattaacataggagatatcataaatgatgggaatttctctttgtttggaaat attacgtatcaagaaccgttgattttggaggaatattactacaccttagacaaattggtttactacgttccaactgatac ggtcaacatcgaatgcaaaggctttgcggacgaaggactgcgaacatttccaaattacactttggatatcggtgagaaag aacccctgacgtacctctatgagacaaagaccaggaagatagacttcattaccaagatggaagaagatattataacagaa tcatacaaaggaggagaaagttccgtcattaatttgcctcttcaaataggagatgaagcttttaactacagcgttgacat gagggtattggtctcggatcgctttggagacattcatgtttttacattcaatatcactgctgaaaattctgtttttaaac tacttgatacaattacgtcagcttatgacgtcaaacttttgctgacagagcaaactgtattcaacaagccacctacaata tacggtgaggacgctgcctccatcacgtcacgagtcatacaattagatctcggcaacaacagcttggcccctcgtgtttc ctttacaaatcctcattacgcctcggcaagacgcgtggtaccgatatttagtccccaagatccagagcagatgttctatc tgtcattcgaggtcgtgaatgacggagatgtctccctcatttacattcaacctgaaaattttgacatattccataaagac aacctgaccctgtacgacttgtaccttggtgaaggtgatctacctaagtcaacctcgaacagtttcaagcataccttcaa ggtgcaagattgggattcagacaatggattcaaggtgatgttaccacagatggataaaggaaagaaatacataggaataa agccatacgaagtaccaaaatttctgcctcccaagaagagacgtaagaaacgatctttggttgatgatgatgtcgttggg cgaaattcctctctgattataagcaatattatgtgtcctttggataactcatctcatcagaataatactgaatgtattga tcccgtcgtaagcataacagatactagtgtcaacatttcctttgaaccaatgaaagccaacttttcagtaataatagtca ctaccggatgtcgatcttggaacgaggctgaaaagaaatggacaacagaaggctgcatgtggttggcgctgaatgagggc gatggagaggtagaacgaattctgccagtgtacaatgaagaggagaaccagaaattcaacactctcttctttcaacaagc agaggtcaacatcacagagaatcatctttggttatctacggttttccgtccacagaaaagtaacttcacaagagtacaaa gactttcctgcatcatagcactcctgttcttgactatgatttcaaacgccatgttcttccgctcacctgatgcgaaagta gttccagaccaagtaagaattggaatgttacggttctcaacgtcaaccgtcttcgtctccgtaatcggaatcttaatcag cacttttccagtgttgttggtgaccctcattttcaggaacacccgtacaaaacatgttgataaaagaatacatgacaaag aaaatgtttgcaaaatcttatccaataatgtcaccgttcttgggaatatagaggacgttaacacattcaagtatttgccc ttaccatacgtgatgaaatatgtgtcttggtcgattatattttgttccgttgtcgcatcaacattcttcctgatcttgta cagcatgcagtggggtaaagctaaatctgaagaatgggttgtctctgttttcttttcatttacggaatcaatcattataa tggatccactcaaggtagtaatcatcgccttcgtcttcgccatcatatgtaaaagtcagagtgaggaccgatgtccagat gtaaatgtaaattggttaaaaacactagcacaaggcttcgagagtcaatccaaacgggctttcattaagacatgcatgac atcaacgctaacagggtcctatatctgttttgacccgtatgaccaatataaggaggagaggactgaccactgccttgcct ggagcacatacaacgctagtgtctgtgacactcctctattcagaaattccttcttcactggtaatgcttggaagtacaca catgctgaggacatctgggggataccggtgtcagggcagtacgctgtctacagtggtggaggctacctcctgccatttga caaggacagacagagggcgtatgccctactgaacgaacttatccaatataattggatcgatcgtgggacacgagcaatct ttgtagagtttactctttataacggtaacgtggatctatttctgtatgttcagtaccttgccgagtttaccgagttaggg ggtagtatgatttggatagattcacagtctttcagaccagtccctacactgagccaagtgggagcatattcccttgtgtg ttacttcttgttttgcgtgtatctcatctatagaactgtaaaatcagttattaaaataaaaactcttccgtgcagaaagt tttgctcgattgtatggaatcttgttgatctgttatgcattctgctgagttattctctgatagtagcatttggattccgg ataagctatgctgataaagccatgggtatgttctacgacatgataggcactggtgacactcgcttcatcaactttcaaca cattgtgatctgggacaatgtattcaacatactgctggccgttctgatttttgttgatactatcagaatccttcgcatcc ttggctacaacaaacgtttctctgatgttgctaatgtcgtttcacatgcttcaagtgaacttttgggttttggattcctg gttggtatcgtatacaccgactatgcttgtcttggtaaccttctctttggtaaaactttgaaggaatacagaagtttctt taccgcttgggcaagtttgacaaatgcattgatcggtaaaaacaaagtagatgaattgttggcagtcgccccaaccatag ctcaggtgtactattttacctacgtcttctgtgtcatcatgattctgggcaccatgtttgctgccatcttgaattctagt atatcgacagtcagagacgaatcattgaaggagtcagaaacgttcgggatcagcgatcttataacacaggctttcaggaa tgtatttggaatgttcttcaatcatcggaagaaggatgcaagaaagcgttacatgatcagtcccaactcttcaagatttg acacattcaacattcttcaacttgtcagaggaacgttcaaagagtatgacacggacagcaaagagaatatcaaatggacc gtgcctaatagagaaatagaacttcttaacattggtacccaaatcttcccgacatgtgcactcaagtag |
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Protein
| Protein ID | pfu_aug1.0_6272.1_59984.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6272.1_59984.t1 RNASEFDIDNKQDNPIVLSSEDKVTVLLVFSTGDVDLNLTAELDNGIHLNTSKAVIDHETGNISYTINASYMKEVEFGSY NLTFSLENSSTVVGTKIVPFIYEEPIAGLDVIIQRNVPVDEEQEFTIALLSGSNVMITWSLDNETQDLVYYKSPRNIINE PYAPIDAEQQFNITFSRGSNVKIVCLVDNTTHDLGFHTSPRNYPLGVIFTTSGHHNVTVIAENTVSRAENSVHVTAYYRL NGFSVIVENTTVSTTDDAVFIICLSNVSQFPMGSISAKVVFGDGNLSTVDINENIAQMQTISCYRFSHQYSIIGNYTAII SIRSKVDAITLGTFEMEIFEKGVTMFDTIPADMNVFYMLPGENVSFHFEYETGGNFINPVNFSAAISNGTLLDTSSSKLN TSTKEIFFTLEHTSMIKILIFEIAFSKEKGNYTAEILISSEIDKKSYAFDIFVWDNLAVILEAKLVGKVFESFNFTFSNP PPSGFAYNIDYGDGNSHSENESVWYYAYEDAPLIHSYNDDGVYHVSVYAWNQIFSSFSNFVITIQYPIPQENITLSPAFY VIPIPDGIMNFHMNLTEDNPQPSNVTCLFDFQDGDEIDRDVGLIFGSPVNKTFVYDFPGEKAVNFTCWNRVSSLTKMSNI TVVNFTLDHFEIIYQSPVNMNTTLSNVVDLNYPRDTPVRKVQHSIVDVYFYVDLLRCHKLPPDIYFQWDFGDGSVETDLV QFKKIHTYTKRGHYEIKVTIFNNKTNEHLEIDPFIITMGIIQFSVEPADGIVSLTEFTFQFEGFEGNTTYIFVPQQVFSN TSFTLDDHIFQYIYPHWGQFQPFVFADNGTVNEIVYMETPVEVDFNLTALDISVNNGSVDTYSIHLPPGYLKVTISVSKY TRMPYTTCDINIGDIINDGNFSLFGNITYQEPLILEEYYYTLDKLVYYVPTDTVNIECKGFADEGLRTFPNYTLDIGEKE PLTYLYETKTRKIDFITKMEEDIITESYKGGESSVINLPLQIGDEAFNYSVDMRVLVSDRFGDIHVFTFNITAENSVFKL LDTITSAYDVKLLLTEQTVFNKPPTIYGEDAASITSRVIQLDLGNNSLAPRVSFTNPHYASARRVVPIFSPQDPEQMFYL SFEVVNDGDVSLIYIQPENFDIFHKDNLTLYDLYLGEGDLPKSTSNSFKHTFKVQDWDSDNGFKVMLPQMDKGKKYIGIK PYEVPKFLPPKKRRKKRSLVDDDVVGRNSSLIISNIMCPLDNSSHQNNTECIDPVVSITDTSVNISFEPMKANFSVIIVT TGCRSWNEAEKKWTTEGCMWLALNEGDGEVERILPVYNEEENQKFNTLFFQQAEVNITENHLWLSTVFRPQKSNFTRVQR LSCIIALLFLTMISNAMFFRSPDAKVVPDQVRIGMLRFSTSTVFVSVIGILISTFPVLLVTLIFRNTRTKHVDKRIHDKE NVCKILSNNVTVLGNIEDVNTFKYLPLPYVMKYVSWSIIFCSVVASTFFLILYSMQWGKAKSEEWVVSVFFSFTESIIIM DPLKVVIIAFVFAIICKSQSEDRCPDVNVNWLKTLAQGFESQSKRAFIKTCMTSTLTGSYICFDPYDQYKEERTDHCLAW STYNASVCDTPLFRNSFFTGNAWKYTHAEDIWGIPVSGQYAVYSGGGYLLPFDKDRQRAYALLNELIQYNWIDRGTRAIF VEFTLYNGNVDLFLYVQYLAEFTELGGSMIWIDSQSFRPVPTLSQVGAYSLVCYFLFCVYLIYRTVKSVIKIKTLPCRKF CSIVWNLVDLLCILLSYSLIVAFGFRISYADKAMGMFYDMIGTGDTRFINFQHIVIWDNVFNILLAVLIFVDTIRILRIL GYNKRFSDVANVVSHASSELLGFGFLVGIVYTDYACLGNLLFGKTLKEYRSFFTAWASLTNALIGKNKVDELLAVAPTIA QVYYFTYVFCVIMILGTMFAAILNSSISTVRDESLKESETFGISDLITQAFRNVFGMFFNHRKKDARKRYMISPNSSRFD TFNILQLVRGTFKEYDTDSKENIKWTVPNREIELLNIGTQIFPTCALK |
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