Gene
| Gene Model ID | pfu_aug1.0_6272.1_59985 |
|---|---|
| Locus | scaffold6272.1 : 38054 ... 43705 : - |
| To GenomeBrowser | scaffold6272.1:38054..43705 |
| Genes list of scaffold | scaffold6272.1 |
| Synonym | pfu_aug2.0_262.1_07263 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6272.1_59985.t1 | 3 | 1 | RRM_6 | 50 | 112 | 2.9e-22 | 78.4 | 4.8e-06 | 0.012 | 15.5 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 1 | RRM_1 | 53 | 111 | 1.3e-30 | 104.7 | 2.4e-07 | 0.00059 | 19.4 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 1 | Nup35_RRM_2 | 58 | 97 | 7.6e-06 | 25.6 | 0.011 | 26.0 | 4.6 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 1 | RRM_5 | 61 | 114 | 1.4e-19 | 69.6 | 1.7e-07 | 0.00042 | 20.1 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 2 | RRM_1 | 225 | 293 | 1.3e-30 | 104.7 | 2.8e-16 | 7.0e-13 | 48.0 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 2 | RRM_6 | 225 | 279 | 2.9e-22 | 78.4 | 1.0e-10 | 2.5e-07 | 30.5 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 2 | Nup35_RRM_2 | 242 | 278 | 7.6e-06 | 25.6 | 0.067 | 160.0 | 2.1 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 2 | RRM_5 | 243 | 289 | 1.4e-19 | 69.6 | 8.4e-05 | 0.21 | 11.4 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 3 | RRM_1 | 306 | 367 | 1.3e-30 | 104.7 | 8.0e-12 | 2.0e-08 | 33.7 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 3 | RRM_6 | 306 | 366 | 2.9e-22 | 78.4 | 4.9e-10 | 1.2e-06 | 28.3 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 3 | Nup35_RRM_2 | 309 | 355 | 7.6e-06 | 25.6 | 6.8e-06 | 0.017 | 14.9 |
| pfu_aug1.0_6272.1_59985.t1 | 3 | 3 | RRM_5 | 324 | 376 | 1.4e-19 | 69.6 | 5.3e-12 | 1.3e-08 | 34.5 |
| pfu_aug1.0_6272.1_59985.t1 | 1 | 1 | SPOC | 516 | 614 | 3.8e-18 | 66.0 | 3.6e-21 | 9.0e-18 | 64.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6272.1_59985.t1 | gi|189238786|ref|XP_974651.2| | PREDICTED: putative RNA-binding protein 15B [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6272.1_59985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6272.1_59985.t1 atgcgtggtcgtgaacctaaacccaaatactatgatgacttgcgtcctaaatatcgagatgaccgcatcgttgatgatta cggcggccccttaagaactgaagctagggttcccgaatatcgctctctttgtctgagtaacatttccagtaaaattccag atcatgtcttgaaagaggccctgtacagggaatttaagaaattcggagagtttaatgtgaatgtcacatacagtggagaa gtaagggttgcgtatataaacttcagatatccggaagatgcaagagaagcaaagcacgctaaacaaaagcttatgttatt tgaaagaccagtgcgtgtggaatccgtgtatcacaaaaagtacaatacgccaagttccaatggtggaggatcaggatatt atccacctcgtgatcattatccccctcctggtccaccacgcggcatgtcaccacctccatttcagcgccgccccagttat catcaaggaccagatccagggatgcccccaaaacgtgactataatctgcagtatcagaaaggtggtggtggtggtggtgg tggtggcagtcaacatggccaagacagttacaacagacgtgctccaaatgaaaaatttccgtatcatttagatcacattc cacctgaagatgatgataaagcaacaaggacgttatttgtaggaaatcttgactacaacattgatgaaccagaactgaga ggtgtatttgacagatatggtggaattgaagagattgatataaaaaggccagctctgggcaaaggaaatgcttatgcttt tatcaaatttctgaatctggattgtgctcatcgtgcaaaagtatccatgtctggagagtatataggacgctttcagtgca agattggttatggcaaagtgactccaagtacatgtctatgggtgggtggtctaggtccttgggtgactcatcagatgttg gaaagagaatttgatcgttttggtgttattgaccgcattgtgtggccacaaggaaaaaattatgcgtatgtgttgtatga caacatcgatgcagcacaagttgcaatcaatgaaatgcgtggtgctccattaggtggaaacgatcgaagacttcgtgtgg atttcgctgatgtaaatcacgtaacaaatgattcaaagatgtcggagaatggaagaggatattctggtggacaaggtgga agtccatggaaaggacagtatgatgaaagaaggagggaatcatgggaaagagatccacaccgtaatcctgacggtccaag agaggacagaaggcgagatgaccttgaccctagaatagatgaccgatatcgacgtagaagtcctgattttcctgataaga gaagacactcacctgataggtatgatggtggttcattaagtagagagaatagacgatctgtacattcacaggatggtatg gatgacgagagaaggacacgccgaatgtctggaacaggagaaactgtgggtgatatctcagaagtggagaatatccaaga aatggcacgttgtctgcaagtggcatggaatggtgcagtgattcttaaaagtagtgctttcccggctcgtatgcatgtag ttagtggtgatgtgaccaccgtggatacactcatgagagatccaacaacaacagaaacaccaacgcttaaaataaaacaa cgtctacgtctagaccaatcaaagctagaggacgtaggacgcagagtgtctgcagcagggagaagtggtcattgtatttt acttgctttacctagttcattgcaaaattatgatgacccatcagtgcagcagagacccctgaaaaaccnggtctcaactt ttgatatcatttga |
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Protein
| Protein ID | pfu_aug1.0_6272.1_59985.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6272.1_59985.t1 MRGREPKPKYYDDLRPKYRDDRIVDDYGGPLRTEARVPEYRSLCLSNISSKIPDHVLKEALYREFKKFGEFNVNVTYSGE VRVAYINFRYPEDAREAKHAKQKLMLFERPVRVESVYHKKYNTPSSNGGGSGYYPPRDHYPPPGPPRGMSPPPFQRRPSY HQGPDPGMPPKRDYNLQYQKGGGGGGGGGSQHGQDSYNRRAPNEKFPYHLDHIPPEDDDKATRTLFVGNLDYNIDEPELR GVFDRYGGIEEIDIKRPALGKGNAYAFIKFLNLDCAHRAKVSMSGEYIGRFQCKIGYGKVTPSTCLWVGGLGPWVTHQML EREFDRFGVIDRIVWPQGKNYAYVLYDNIDAAQVAINEMRGAPLGGNDRRLRVDFADVNHVTNDSKMSENGRGYSGGQGG SPWKGQYDERRRESWERDPHRNPDGPREDRRRDDLDPRIDDRYRRRSPDFPDKRRHSPDRYDGGSLSRENRRSVHSQDGM DDERRTRRMSGTGETVGDISEVENIQEMARCLQVAWNGAVILKSSAFPARMHVVSGDVTTVDTLMRDPTTTETPTLKIKQ RLRLDQSKLEDVGRRVSAAGRSGHCILLALPSSLQNYDDPSVQQRPLKNXVSTFDII |
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