Gene
| Gene Model ID | pfu_aug1.0_6278.1_59988 |
|---|---|
| Locus | scaffold6278.1 : 18842 ... 31815 : - |
| To GenomeBrowser | scaffold6278.1:18842..31815 |
| Genes list of scaffold | scaffold6278.1 |
| Synonym | pfu_aug2.0_1779.1_31893 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI CAA04528.1 (Branchiostoma lanceolatum) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6278.1_59988.t1 | 3 | 1 | SPARC_Ca_bdg | 40 | 76 | 8.3e-08 | 32.2 | 0.0022 | 1.6 | 8.7 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 1 | EF-hand_1 | 44 | 71 | 7.2e-38 | 125.0 | 1.1e-09 | 8.1e-07 | 27.9 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 1 | EF-hand_6 | 44 | 72 | 1.4e-29 | 99.2 | 3.2e-09 | 2.4e-06 | 26.9 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 1 | EF-hand_7 | 45 | 104 | 3.2e-37 | 126.4 | 3.4e-10 | 2.5e-07 | 30.7 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 1 | EF-hand_5 | 46 | 65 | 2.3e-28 | 96.2 | 1.1e-08 | 8.5e-06 | 24.8 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 1 | EF-hand_9 | 47 | 107 | 5.3e-09 | 35.8 | 0.00026 | 0.19 | 11.6 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 1 | EF-hand_8 | 48 | 64 | 2.6e-32 | 110.2 | 0.00024 | 0.18 | 11.4 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 2 | EF-hand_8 | 56 | 106 | 2.6e-32 | 110.2 | 1.7e-06 | 0.0013 | 18.3 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 1 | UPF0154 | 59 | 84 | 4.8e-06 | 26.1 | 0.0075 | 5.6 | 6.6 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 2 | EF-hand_1 | 94 | 106 | 7.2e-38 | 125.0 | 0.012 | 9.2 | 5.8 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 3 | EF-hand_8 | 95 | 136 | 2.6e-32 | 110.2 | 1.5e-07 | 0.00011 | 21.7 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 2 | SPARC_Ca_bdg | 112 | 172 | 8.3e-08 | 32.2 | 0.0034 | 2.5 | 8.1 |
| pfu_aug1.0_6278.1_59988.t1 | 2 | 1 | EFhand_Ca_insen | 113 | 160 | 1.5e-11 | 44.0 | 2.0e-07 | 0.00015 | 21.6 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 3 | EF-hand_1 | 116 | 143 | 7.2e-38 | 125.0 | 3.7e-10 | 2.7e-07 | 29.3 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 2 | EF-hand_6 | 116 | 142 | 1.4e-29 | 99.2 | 3.7e-11 | 2.7e-08 | 33.0 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 2 | EF-hand_7 | 117 | 174 | 3.2e-37 | 126.4 | 3.0e-15 | 2.3e-12 | 46.8 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 2 | EF-hand_5 | 117 | 139 | 2.3e-28 | 96.2 | 2.9e-10 | 2.1e-07 | 29.9 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 2 | EF-hand_9 | 120 | 175 | 5.3e-09 | 35.8 | 0.0017 | 1.3 | 9.0 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 4 | EF-hand_8 | 129 | 170 | 2.6e-32 | 110.2 | 4.1e-12 | 3.0e-09 | 36.3 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 2 | UPF0154 | 132 | 160 | 4.8e-06 | 26.1 | 0.0044 | 3.2 | 7.4 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 4 | EF-hand_1 | 152 | 171 | 7.2e-38 | 125.0 | 1.0e-05 | 0.0075 | 15.4 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 3 | EF-hand_5 | 154 | 169 | 2.3e-28 | 96.2 | 0.0017 | 1.3 | 8.5 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 3 | EF-hand_6 | 158 | 169 | 1.4e-29 | 99.2 | 0.26 | 200.0 | 2.3 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 5 | EF-hand_1 | 175 | 187 | 7.2e-38 | 125.0 | 0.012 | 9.2 | 5.8 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 5 | EF-hand_8 | 176 | 211 | 2.6e-32 | 110.2 | 5.0e-06 | 0.0037 | 16.8 |
| pfu_aug1.0_6278.1_59988.t1 | 2 | 2 | EFhand_Ca_insen | 194 | 224 | 1.5e-11 | 44.0 | 6.4e-07 | 0.00047 | 20.0 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 3 | SPARC_Ca_bdg | 196 | 255 | 8.3e-08 | 32.2 | 0.00017 | 0.12 | 12.3 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 6 | EF-hand_1 | 198 | 224 | 7.2e-38 | 125.0 | 6.6e-10 | 4.9e-07 | 28.5 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 3 | EF-hand_7 | 198 | 257 | 3.2e-37 | 126.4 | 1.3e-18 | 1.0e-15 | 57.6 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 4 | EF-hand_6 | 198 | 223 | 1.4e-29 | 99.2 | 5.1e-11 | 3.8e-08 | 32.5 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 4 | EF-hand_5 | 198 | 220 | 2.3e-28 | 96.2 | 2.9e-10 | 2.1e-07 | 29.9 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 3 | EF-hand_9 | 201 | 259 | 5.3e-09 | 35.8 | 0.00022 | 0.17 | 11.8 |
| pfu_aug1.0_6278.1_59988.t1 | 6 | 6 | EF-hand_8 | 210 | 259 | 2.6e-32 | 110.2 | 1.6e-16 | 1.2e-13 | 50.4 |
| pfu_aug1.0_6278.1_59988.t1 | 3 | 3 | UPF0154 | 213 | 241 | 4.8e-06 | 26.1 | 0.0033 | 2.5 | 7.7 |
| pfu_aug1.0_6278.1_59988.t1 | 7 | 7 | EF-hand_1 | 233 | 260 | 7.2e-38 | 125.0 | 4.1e-10 | 3.1e-07 | 29.2 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 5 | EF-hand_5 | 234 | 258 | 2.3e-28 | 96.2 | 3.7e-06 | 0.0027 | 16.9 |
| pfu_aug1.0_6278.1_59988.t1 | 5 | 5 | EF-hand_6 | 239 | 260 | 1.4e-29 | 99.2 | 0.0003 | 0.22 | 11.4 |
Transcript
| Transcript ID | pfu_aug1.0_6278.1_59988.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6278.1_59988.t1 atgggcaaccggtgccgacttaggcggccatccgccacggacatagcagaagattatcggtgtcaaacgttgagtcgaag ttatatacttcttctaaaggtcgacagaacagagagaaatctgattcatttcaagaatgcgtttgatcgctttgatgaga atggtgacggtaccatcactaaggcagagcttaatgttataatgcattccctaggccacaacccaacggacaatgagctg tatgaaatattaacagaaagtggaccagaggggtacgaaaggattgattttaccgaatttcttctgatgatggcaaagcg catgcgcagtggtgcaactgaggacgagttaatggcagccttccgggcatttgatgatgacggggatggctttataacat ctaaagaactacgacaggccttaattaaagtgggagaacacatgtcagagaaagaaattatagatatgatcaaagaggcc gacttagatggtgacggaatggtgaattatcaaggctacgaaaggattgattttaccgaatttcttctgatgatggctaa gcgcatgcgcagtggtgcaactgaggacgacttaatggcggccttccgggcatttgatgatgacggggatggcttcataa catctaaagaactacgacaggccttaattaaagtgggagaacacatgtcagagaaagaaattgtagatatgatcaaagag gccgacttagatggtgacggaatggtgaattatcaagagtttgttcaaatggtcagatcttctgggaagaagtag |
|
Protein
| Protein ID | pfu_aug1.0_6278.1_59988.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6278.1_59988.t1 MGNRCRLRRPSATDIAEDYRCQTLSRSYILLLKVDRTERNLIHFKNAFDRFDENGDGTITKAELNVIMHSLGHNPTDNEL YEILTESGPEGYERIDFTEFLLMMAKRMRSGATEDELMAAFRAFDDDGDGFITSKELRQALIKVGEHMSEKEIIDMIKEA DLDGDGMVNYQGYERIDFTEFLLMMAKRMRSGATEDDLMAAFRAFDDDGDGFITSKELRQALIKVGEHMSEKEIVDMIKE ADLDGDGMVNYQEFVQMVRSSGKK |
|