Gene
| Gene Model ID | pfu_aug1.0_6282.1_38306 |
|---|---|
| Locus | scaffold6282.1 : 10228 ... 27825 : - |
| To GenomeBrowser | scaffold6282.1:10228..27825 |
| Genes list of scaffold | scaffold6282.1 |
| Synonym | pfu_aug2.0_401.1_04113 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6282.1_38306.t1 | 1 | 1 | Peptidase_M24 | 151 | 350 | 3.0e-30 | 105.3 | 5.9e-34 | 4.4e-30 | 104.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6282.1_38306.t1 | gi|260826682|ref|XP_002608294.1| | hypothetical protein BRAFLDRAFT_125093 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6282.1_38306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6282.1_38306.t1 atgagttggcaagataaagtgaagaaaatcagagataagatgaaagttaagaaatgtgaagctctagttgttacagccct tgatgagattgcgtatctgtttaatctgagaggagctgatattgagtttaatccagttttctttgcttatggtgtcgtaa ctatgaattcagtcaaccttttcatagacgagactcgtttagatgaagccgtaagccagcatctgcagctaaacggatcc aataaagatccgagtaccgcaattactgtccatccgtatggggagatcggatcgttcatgtcagggctagcagataaagt acagggcaaagtttggatcagtacaaaatcaagccaagcagtatttggatcaattcccaaggaaaggcggttgtcccagc cctcacctgtggccagcatgaaagctgtcaaaaataaaacagagattgctggtatgaagagagctcatgtgaaggatgct gtaacactttgtgaatacttcagctggttggaacaagaggtaccaaaaggcaaagtcacagaagtttctgctgcagagaa attagagcaaatcaaacaagagcaagaagattacattagtctgagttttgctactatttccagtacggggccaaatggag ctattatacactataaggctacagaggagacagaccaagttgtcgcggcagataacgtttatttgtgtgattctggagcc caatatagggatggtactacagatgtgaccaggaccactcattttggtacaccttcctcacatgtaaaggaatgttacac aagggtactgaagggccacataaatcttagttctgccatatttcctaatggagttaaagggcatatgttggattccttag ccaggacctcactgtgggacattggtttagactatgttcatggtacaggacatggtgtaggatgctttctcaacgtacat gaagaaatttctggtattcatgtcttcatgatgagtaattcttctttgcagcataatttcaaggacaaaggtttcctgac ctttgaacccttgaccctagtcccaatgtttacaaggttgattgatccgtctttactgtctcagaaagagattgattggc tgaatgattaccattctaagtgcctccaaattgttggtgaggagctcatgaatcaaggaaaaacggcagcatataaatgg ctaaagaaggaggctcagatcattggatga |
|
Protein
| Protein ID | pfu_aug1.0_6282.1_38306.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6282.1_38306.t1 MSWQDKVKKIRDKMKVKKCEALVVTALDEIAYLFNLRGADIEFNPVFFAYGVVTMNSVNLFIDETRLDEAVSQHLQLNGS NKDPSTAITVHPYGEIGSFMSGLADKVQGKVWISTKSSQAVFGSIPKERRLSQPSPVASMKAVKNKTEIAGMKRAHVKDA VTLCEYFSWLEQEVPKGKVTEVSAAEKLEQIKQEQEDYISLSFATISSTGPNGAIIHYKATEETDQVVAADNVYLCDSGA QYRDGTTDVTRTTHFGTPSSHVKECYTRVLKGHINLSSAIFPNGVKGHMLDSLARTSLWDIGLDYVHGTGHGVGCFLNVH EEISGIHVFMMSNSSLQHNFKDKGFLTFEPLTLVPMFTRLIDPSLLSQKEIDWLNDYHSKCLQIVGEELMNQGKTAAYKW LKKEAQIIG |
|