Gene
| Gene Model ID | pfu_aug1.0_630.1_50955 |
|---|---|
| Locus | scaffold630.1 : 24985 ... 38444 : + |
| To GenomeBrowser | scaffold630.1:24985..38444 |
| Genes list of scaffold | scaffold630.1 |
| Synonym | pfu_aug2.0_47.1_23332 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_630.1_50955.t2 | 1 | 1 | KH_1 | 117 | 179 | 1.9e-18 | 65.8 | 8.9e-22 | 3.3e-18 | 65.0 |
| pfu_aug1.0_630.1_50955.t2 | 1 | 1 | KH_3 | 127 | 167 | 6.4e-13 | 48.0 | 4.6e-16 | 1.7e-12 | 46.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| mix | 4 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_630.1_50955.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50955.t1 atgattggacgtatcagaatggaacaaaacgtgtggtacacagagcgagctatcgtcgacaatgtgttcaaacgtgaaaa aagacattcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgttatcttcgccgggggtc aggcttacacagttcaaggtcaaattcctgggattcccccagctgagaaagagagaattgcaattcccaaagttgagttg tccaagttacatcaattgaccctcggacaccaggccattcccttaatacctacttcaccccagattatccaagcagtacc tggcatgccaccaatggcggcttacccacggccaaatgcagcagccattccagcggctccccagcaacagcagccgccgc agcaacaaaccaccacagaaatggcgatccctaatgacctcatcgggtgcatcataggtagaggtggacagaaaattaat gagataagacaaatgtcaggtgcggtgataaaaatagcgaatgccgaagaaggggcgcctgaccgcaaagtaacgattac gggtactccagagacgataagcatggcacaatacctgataaatactaggtgcgtatatccccaacaagtgtattactact aa |
|
| Transcript ID | pfu_aug1.0_630.1_50955.t2 |
| Definition | - |
>pfu_aug1.0_630.1_50955.t2 atgaataagatctacaaaaaagagtcgccacccaaaggggccacaattcaataccgtccaaaacctgtagttccacccgt tatcttcgccgggggtcaggcttacacagttcaaggtcaaattcctgggattcccccagctgagaaagagagaattgcaa ttcccaaagttgagttgtccaagttacatcaattgaccctcggacaccaggccattcccttaatacctacttcaccccag attatccaagcagtacctggcatgccaccaatggcggcttacccacggccaaatgcagcagccattccagcggctcccca gcaacagcagccgccgcagcaacaaaccaccacagaaatggcgatccctaatgacctcatcgggtgcatcataggtagag gtggacagaaaattaatgagataagacaaatgtcaggtgcggtgataaaaatagcgaatgccgaagaaggggcgcctgac cgcaaagtaacgattacgggtactccagagacgataagcatggcacaatacctgataaatactaggtgcgtatatcccca acaagtgtattactactaa |
|
Protein
| Protein ID | pfu_aug1.0_630.1_50955.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50955.t1 MIGRIRMEQNVWYTERAIVDNVFKREKRHSPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEKERIAIPKVEL SKLHQLTLGHQAIPLIPTSPQIIQAVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKIN EIRQMSGAVIKIANAEEGAPDRKVTITGTPETISMAQYLINTRCVYPQQVYYY |
|
| Protein ID | pfu_aug1.0_630.1_50955.t2 |
| Definition | - |
>pfu_aug1.0_630.1_50955.t2 MNKIYKKESPPKGATIQYRPKPVVPPVIFAGGQAYTVQGQIPGIPPAEKERIAIPKVELSKLHQLTLGHQAIPLIPTSPQ IIQAVPGMPPMAAYPRPNAAAIPAAPQQQQPPQQQTTTEMAIPNDLIGCIIGRGGQKINEIRQMSGAVIKIANAEEGAPD RKVTITGTPETISMAQYLINTRCVYPQQVYYY |
|