Gene
| Gene Model ID | pfu_aug1.0_630.1_50957 |
|---|---|
| Locus | scaffold630.1 : 55934 ... 71525 : - |
| To GenomeBrowser | scaffold630.1:55934..71525 |
| Genes list of scaffold | scaffold630.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_630.1_50957.t1 | 5 | 1 | Ldl_recept_a | 10 | 45 | 1.3e-15 | 56.9 | 3.2e-13 | 4.8e-09 | 35.9 |
| pfu_aug1.0_630.1_50957.t1 | 5 | 2 | Ldl_recept_a | 163 | 197 | 1.3e-15 | 56.9 | 4.7e-07 | 0.007 | 16.2 |
| pfu_aug1.0_630.1_50957.t1 | 5 | 3 | Ldl_recept_a | 207 | 234 | 1.3e-15 | 56.9 | 0.0004 | 5.9 | 6.8 |
| pfu_aug1.0_630.1_50957.t1 | 5 | 4 | Ldl_recept_a | 251 | 292 | 1.3e-15 | 56.9 | 7.5e-07 | 0.011 | 15.6 |
| pfu_aug1.0_630.1_50957.t1 | 5 | 5 | Ldl_recept_a | 302 | 312 | 1.3e-15 | 56.9 | 0.18 | 2700.0 | -1.7 |
Transcript
| Transcript ID | pfu_aug1.0_630.1_50957.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50957.t1 atgttttacggtgacgttacaggcgagaagtgcagaaaaaatcagtaccaatgttttgatgggagttgtatccccttgag agggttttgtgatggtcacgtggaatgtgaagacaaatcagacgagttgaactgtcacacaacgtcatctgcaaagattc tcattcttggacacaatttcaccttcgccagattaacaagtccaatccttactcacgtcattgcctcagattttatcaag ttcaatgtttctgtttcaaaaccaaagaatgtatactggtcaactaaaatatggcgacaggaagatatggatggcgaacg ttttccaaaccctataagaaaatggtctttgcaagagaaggaattcttcatcttgcaagaacaaatttacgcttacatct tcttctatggattcggctattacaacgttaccgtggacttgcaagaaatttcaatattggaccattcagaggctataaca aattacaattgcggaggtgatgaattcgaatgctcgcccttttctggttcgtacattccagttgagttcgttagtgacgg tttcgttgattgtgagcatggaaaagatgaaagcgttaccgaaacaggagaaactgtaacgtgtgatgaaaatcaaatga aatgtccctcgtcaggtgtgtgcatctcgactaatgcttcagcttcgttgaagaagcagtgtaaaagcaactctacctca agaccgtatgtcatacagaatactttttgtccgaacgatttcgaatgcaaaagagaattcggaatgcttgacaacggtac tgcaatctgtcttaacacaactaatctttgtgatggtgttcctcattgtccgtattgggatgatgaagtgaattgtccgt cggtatgcccgattcaatgcatggactgttctctggggacatacaaatgccatgcagagaattgggatagtattccccga aatgcaaagaacattgatctgtctggacaaaatgtgaatataactgaactatgttcggagcccaggatcgggaatttgga tgtctcagataataagataacaaattcgtcgatacatggcttcggcatgaatataaacctcgacagaaatcaaggattta atttgaaaatattatctgctcttgtatctaagctatcattgcgagatgcaggataccttgttatgttcgacatagatgtg gtgggctatgactggattactctcttcttgataccatcatgtagcgttgcaaatctttgtgtcagatggaaactcagaca aggacgaggaaatgatcaaaatattgaagtgcttgttattgatacagaaaataagaaatttctggagcccgtttacatca aggtggtacggaaaataatacggtacgccggagttcgctactgttcccatggtatttctttaaaatattcccttaccttc tcgactttgatgggtaactcttctatgtttataaggatatag |
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Protein
| Protein ID | pfu_aug1.0_630.1_50957.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50957.t1 MFYGDVTGEKCRKNQYQCFDGSCIPLRGFCDGHVECEDKSDELNCHTTSSAKILILGHNFTFARLTSPILTHVIASDFIK FNVSVSKPKNVYWSTKIWRQEDMDGERFPNPIRKWSLQEKEFFILQEQIYAYIFFYGFGYYNVTVDLQEISILDHSEAIT NYNCGGDEFECSPFSGSYIPVEFVSDGFVDCEHGKDESVTETGETVTCDENQMKCPSSGVCISTNASASLKKQCKSNSTS RPYVIQNTFCPNDFECKREFGMLDNGTAICLNTTNLCDGVPHCPYWDDEVNCPSVCPIQCMDCSLGTYKCHAENWDSIPR NAKNIDLSGQNVNITELCSEPRIGNLDVSDNKITNSSIHGFGMNINLDRNQGFNLKILSALVSKLSLRDAGYLVMFDIDV VGYDWITLFLIPSCSVANLCVRWKLRQGRGNDQNIEVLVIDTENKKFLEPVYIKVVRKIIRYAGVRYCSHGISLKYSLTF STLMGNSSMFIRI |
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