Gene
| Gene Model ID | pfu_aug1.0_630.1_50958 |
|---|---|
| Locus | scaffold630.1 : 76949 ... 96567 : - |
| To GenomeBrowser | scaffold630.1:76949..96567 |
| Genes list of scaffold | scaffold630.1 |
| Synonym | pfu_aug2.0_47.1_23334 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_630.1_50958.t1 | 3 | 1 | Ldl_recept_a | 122 | 156 | 1.4e-07 | 31.3 | 6.4e-11 | 1.4e-07 | 31.3 |
| pfu_aug1.0_630.1_50958.t1 | 3 | 2 | Ldl_recept_a | 167 | 183 | 1.4e-07 | 31.3 | 0.41 | 860.0 | -0.1 |
| pfu_aug1.0_630.1_50958.t1 | 3 | 3 | Ldl_recept_a | 211 | 251 | 1.4e-07 | 31.3 | 2.1e-05 | 0.045 | 13.6 |
| pfu_aug1.0_630.1_50958.t1 | 3 | 1 | LRR_5 | 281 | 311 | 5.4e-11 | 42.3 | 0.18 | 380.0 | 0.7 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 1 | LRR_8 | 282 | 339 | 2.7e-38 | 129.5 | 0.00021 | 0.44 | 10.3 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 2 | LRR_8 | 303 | 345 | 2.7e-38 | 129.5 | 9.8e-05 | 0.21 | 11.3 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 1 | LRR_1 | 303 | 321 | 1.0e-17 | 61.4 | 0.00074 | 1.6 | 9.0 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 1 | LRR_6 | 303 | 318 | 2.0e-08 | 33.4 | 0.00046 | 0.98 | 9.6 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 1 | LRR_7 | 303 | 317 | 8.2e-08 | 31.2 | 0.0084 | 18.0 | 6.1 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 1 | LRR_4 | 304 | 341 | 8.8e-29 | 98.6 | 1.1e-06 | 0.0023 | 17.4 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 2 | LRR_6 | 327 | 342 | 2.0e-08 | 33.4 | 0.0069 | 15.0 | 6.0 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 2 | LRR_1 | 328 | 343 | 1.0e-17 | 61.4 | 0.04 | 85.0 | 3.7 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 2 | LRR_4 | 351 | 361 | 8.8e-29 | 98.6 | 0.15 | 330.0 | 1.0 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 3 | LRR_1 | 351 | 361 | 1.0e-17 | 61.4 | 0.2 | 430.0 | 1.6 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 3 | LRR_8 | 369 | 400 | 2.7e-38 | 129.5 | 0.85 | 1800.0 | -1.3 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 2 | LRR_7 | 418 | 429 | 8.2e-08 | 31.2 | 0.99 | 2100.0 | -0.2 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 4 | LRR_8 | 419 | 448 | 2.7e-38 | 129.5 | 0.024 | 50.0 | 3.7 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 3 | LRR_4 | 419 | 453 | 8.8e-29 | 98.6 | 0.00013 | 0.27 | 10.9 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 4 | LRR_1 | 419 | 431 | 1.0e-17 | 61.4 | 0.0067 | 14.0 | 6.1 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 3 | LRR_6 | 419 | 430 | 2.0e-08 | 33.4 | 0.13 | 270.0 | 2.1 |
| pfu_aug1.0_630.1_50958.t1 | 3 | 2 | LRR_5 | 427 | 554 | 5.4e-11 | 42.3 | 9.8e-11 | 2.1e-07 | 30.7 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 5 | LRR_8 | 441 | 497 | 2.7e-38 | 129.5 | 4.0e-11 | 8.5e-08 | 31.8 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 3 | LRR_7 | 462 | 476 | 8.2e-08 | 31.2 | 0.01 | 22.0 | 5.8 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 6 | LRR_8 | 463 | 521 | 2.7e-38 | 129.5 | 4.7e-17 | 9.9e-14 | 50.8 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 4 | LRR_4 | 463 | 500 | 8.8e-29 | 98.6 | 5.1e-10 | 1.1e-06 | 28.1 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 5 | LRR_1 | 463 | 484 | 1.0e-17 | 61.4 | 8.6e-05 | 0.18 | 11.9 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 4 | LRR_6 | 463 | 479 | 2.0e-08 | 33.4 | 0.05 | 110.0 | 3.4 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 7 | LRR_8 | 486 | 543 | 2.7e-38 | 129.5 | 7.9e-14 | 1.7e-10 | 40.5 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 5 | LRR_6 | 486 | 499 | 2.0e-08 | 33.4 | 0.29 | 610.0 | 1.0 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 4 | LRR_7 | 486 | 500 | 8.2e-08 | 31.2 | 0.54 | 1100.0 | 0.6 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 6 | LRR_1 | 487 | 507 | 1.0e-17 | 61.4 | 0.012 | 25.0 | 5.4 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 5 | LRR_4 | 510 | 551 | 8.8e-29 | 98.6 | 2.4e-08 | 5.0e-05 | 22.8 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 7 | LRR_1 | 510 | 532 | 1.0e-17 | 61.4 | 5.6e-05 | 0.12 | 12.5 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 6 | LRR_6 | 510 | 521 | 2.0e-08 | 33.4 | 0.0099 | 21.0 | 5.5 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 5 | LRR_7 | 510 | 525 | 8.2e-08 | 31.2 | 0.0021 | 4.5 | 7.9 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 8 | LRR_8 | 534 | 593 | 2.7e-38 | 129.5 | 4.3e-15 | 9.0e-12 | 44.5 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 8 | LRR_1 | 534 | 556 | 1.0e-17 | 61.4 | 0.0009 | 1.9 | 8.8 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 7 | LRR_6 | 534 | 547 | 2.0e-08 | 33.4 | 0.82 | 1700.0 | -0.4 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 6 | LRR_7 | 534 | 549 | 8.2e-08 | 31.2 | 0.17 | 360.0 | 2.1 |
| pfu_aug1.0_630.1_50958.t1 | 3 | 3 | LRR_5 | 552 | 603 | 5.4e-11 | 42.3 | 0.00022 | 0.47 | 10.1 |
| pfu_aug1.0_630.1_50958.t1 | 6 | 6 | LRR_4 | 559 | 599 | 8.8e-29 | 98.6 | 5.2e-10 | 1.1e-06 | 28.0 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 9 | LRR_1 | 559 | 580 | 1.0e-17 | 61.4 | 0.00045 | 0.95 | 9.7 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 8 | LRR_6 | 559 | 569 | 2.0e-08 | 33.4 | 0.0087 | 18.0 | 5.7 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 7 | LRR_7 | 559 | 572 | 8.2e-08 | 31.2 | 0.025 | 53.0 | 4.6 |
| pfu_aug1.0_630.1_50958.t1 | 10 | 10 | LRR_1 | 582 | 594 | 1.0e-17 | 61.4 | 0.0014 | 2.9 | 8.2 |
| pfu_aug1.0_630.1_50958.t1 | 9 | 9 | LRR_6 | 582 | 594 | 2.0e-08 | 33.4 | 0.0062 | 13.0 | 6.2 |
| pfu_aug1.0_630.1_50958.t1 | 8 | 8 | LRR_7 | 582 | 594 | 8.2e-08 | 31.2 | 0.0036 | 7.6 | 7.2 |
Transcript
| Transcript ID | pfu_aug1.0_630.1_50958.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50958.t1 caaacgagtgtcttttgagacatgacttgtacggagaagatgaagttcttggttaccatggcaacagacaaattacgaaa gatgataccactggagaagcaaatatattcataagtggacataacttcagttacatcgtactgtccagtcccattttaac gaacgccaggcacacggatttaatccggttcgattgtacagtaagaaaaccacaaaatgtgtattggacaaccgaaatat tggatcaattcacgaaggactccaaggaatttccaacgactctgagagagtggacgtttgagaacaagactaacatccct attcaacagttcatgagtcattatactcgacaaaagagagagagcggttgtgaagaagatgaattccagtgtggatcatc accatccttttgtattccagctgaatttgttggagatggttataaagattgtaaaaatggttttgatgaacgattttccc aatcagaagattacctttcgtgtgataagaatcaagaagaatgcccttggtcaggcgtttgtatttcgaaaaattcttca gcttttctcaaagagcaatgtcaaagcaatcgaaccgccagaccatatgaaatattgaatacgacttgtccaaattattt tgaatgcaaaagagaattcggaataaatgacctcggccgagccatttgtattgaagagaatgccctttgcgatggtattc cacattgcccgttttgggatgatgaagtcaagtgtccggttgtttgtcctcaagaatgcaaatcttgtttgcgaagggcg tacaaatgtcatgcagggtccgttagaaagattcctcaaaatgcaaaaagcattgatctgtcggggcagattttaaacat cactgaattgtgtgcaatatcgaggatttctctttcatcgttgaatatttctagatgtggattgacggatatatcttgct tgtttaaatggggacgatatccgtcattgaggcatgtagatgtttccaaaaacgagataagcgattcaatcatcgatgga tggcgtatgaaaatcaatctagacgggaaccctgtaactaatataaggataacagcaatggaggtgaacactcttacatt acggaattcgaacgtcacaaaagtccaatggttctacgataaaatacgtcttaaaggttatctctgtattaactgtaatc taacagatagagaaaaagaagactactgtccagattgtaagctaagattatgtgttcgatacttcaacctttctggaaac tccataagtaatgtgcggttcatcaacgactgtgtgtttcttgttagaattgacgtgtcccacaacaaagtagcttcatt cgggaaacgatcgtataagttatattacctacaagaactctacatacatcacaaccttcttactgatataagtccgtctg tttttcacaacatgagcgccttaaagatcattgacctgggttggaatcatattgactcaatacaagataaaagttttcga acattggtaagattgacaatcctgaacctgagctttaataagcttcggacattacctgccactgttttcaacaacctcat tagtctgcataccttgtcattgcaagggaactggtttgaggaccttccagacctgctgttcaaagatcttctcgggctga ccacattagacattagcaaaaacaatctgaaatttctcagaaacgatctatttgaaggtcttatatctctgaaaaattta gatctcagaggcaataacattgaagcatatgagactttatttgacagatcagacatccacagacagaaacgcaaaggaac aaggaacaccaactcgcagcatcgaaacatgaaacacaaaagaccacacataaaccaacgagaccaatgggttaaagtcg acattgggaaatgggttaaagtcgacatcggggaatag |
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Protein
| Protein ID | pfu_aug1.0_630.1_50958.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_630.1_50958.t1 NECLLRHDLYGEDEVLGYHGNRQITKDDTTGEANIFISGHNFSYIVLSSPILTNARHTDLIRFDCTVRKPQNVYWTTEIL DQFTKDSKEFPTTLREWTFENKTNIPIQQFMSHYTRQKRESGCEEDEFQCGSSPSFCIPAEFVGDGYKDCKNGFDERFSQ SEDYLSCDKNQEECPWSGVCISKNSSAFLKEQCQSNRTARPYEILNTTCPNYFECKREFGINDLGRAICIEENALCDGIP HCPFWDDEVKCPVVCPQECKSCLRRAYKCHAGSVRKIPQNAKSIDLSGQILNITELCAISRISLSSLNISRCGLTDISCL FKWGRYPSLRHVDVSKNEISDSIIDGWRMKINLDGNPVTNIRITAMEVNTLTLRNSNVTKVQWFYDKIRLKGYLCINCNL TDREKEDYCPDCKLRLCVRYFNLSGNSISNVRFINDCVFLVRIDVSHNKVASFGKRSYKLYYLQELYIHHNLLTDISPSV FHNMSALKIIDLGWNHIDSIQDKSFRTLVRLTILNLSFNKLRTLPATVFNNLISLHTLSLQGNWFEDLPDLLFKDLLGLT TLDISKNNLKFLRNDLFEGLISLKNLDLRGNNIEAYETLFDRSDIHRQKRKGTRNTNSQHRNMKHKRPHINQRDQWVKVD IGKWVKVDIGE |
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