Gene
| Gene Model ID | pfu_aug1.0_631.1_43759 |
|---|---|
| Locus | scaffold631.1 : 3181 ... 14795 : - |
| To GenomeBrowser | scaffold631.1:3181..14795 |
| Genes list of scaffold | scaffold631.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_631.1_43759.t1 | 1 | 1 | 3Beta_HSD | 7 | 80 | 4.6e-09 | 35.3 | 2.9e-12 | 5.3e-09 | 35.1 |
| pfu_aug1.0_631.1_43759.t1 | 1 | 1 | Epimerase | 7 | 76 | 3.4e-08 | 33.2 | 2.2e-11 | 4.1e-08 | 32.9 |
| pfu_aug1.0_631.1_43759.t1 | 1 | 1 | NAD_binding_10 | 7 | 74 | 9.4e-06 | 25.7 | 5.5e-09 | 1.0e-05 | 25.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_631.1_43759.t1 | gi|350581650|ref|XP_003481083.1| | PREDICTED: putative short-chain dehydrogenase/reductase family 42E member 2 [Sus scrofa] | 2.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_631.1_43759.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_631.1_43759.t1 atgactcgtgagacccatttagtaacaggaggtggtgggtatccagggtatcaccttggtaagaaactcgctgaattagg aaaatctgttattctcctggacataagacctccatcatggcagatggtagaaggaatgaagttcatccagtgtaacatca ctcggtatgatgaagtagaggaggcttttagaggagtggactgtgtatatcatttagcatcttatggcatgtcagggaga gaacagttgttagcattttcgttggtcctcaataggacagattctcgaattaaaaactgtgaaatctttgactactccct gtgtgctgccgtgataaaatgctaccacgagatgagctttgtaatctttgattacactatgtttttatttagtgaaaata aataa |
|
Protein
| Protein ID | pfu_aug1.0_631.1_43759.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_631.1_43759.t1 MTRETHLVTGGGGYPGYHLGKKLAELGKSVILLDIRPPSWQMVEGMKFIQCNITRYDEVEEAFRGVDCVYHLASYGMSGR EQLLAFSLVLNRTDSRIKNCEIFDYSLCAAVIKCYHEMSFVIFDYTMFLFSENK |
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