Gene
| Gene Model ID | pfu_aug1.0_631.1_43760 |
|---|---|
| Locus | scaffold631.1 : 16396 ... 46520 : + |
| To GenomeBrowser | scaffold631.1:16396..46520 |
| Genes list of scaffold | scaffold631.1 |
| Synonym | pfu_aug2.0_91.1_03593 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_631.1_43760.t2 | 5 | 1 | SHIPPO-rpt | 16 | 23 | 2.5e-09 | 37.5 | 0.0013 | 19.0 | 6.3 |
| pfu_aug1.0_631.1_43760.t2 | 5 | 2 | SHIPPO-rpt | 62 | 78 | 2.5e-09 | 37.5 | 0.0012 | 18.0 | 6.4 |
| pfu_aug1.0_631.1_43760.t2 | 5 | 3 | SHIPPO-rpt | 102 | 115 | 2.5e-09 | 37.5 | 0.0025 | 37.0 | 5.4 |
| pfu_aug1.0_631.1_43760.t2 | 5 | 4 | SHIPPO-rpt | 161 | 171 | 2.5e-09 | 37.5 | 5.3e-05 | 0.78 | 10.7 |
| pfu_aug1.0_631.1_43760.t2 | 5 | 5 | SHIPPO-rpt | 193 | 202 | 2.5e-09 | 37.5 | 0.00061 | 9.1 | 7.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_631.1_43760.t2 | gi|115730761|ref|XP_782571.2| | PREDICTED: sperm-tail PG-rich repeat-containing protein 2 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_631.1_43760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_631.1_43760.t1 atgactgggcaagcctcgtcatggtacaagcaaatccaggacactcagagattcacaccattaaaaaaggtgacaccatc tcctggatcatacaatgatcctagaaatgcatttgattctctgaaaaggataacaggcttaaagaggagtccatttggtc agacatcagtccgcttcaacccagaaccacatgtaaagaaaactccaggtccaggggcgtacaatattgctggtatgggg tcagacagcatgaggagggcgtacatagagagtaccaggaaaggggtgtttggaaccacatcagtgaggatcaagcctat cacgaggaaagatgaccaagaacaacctggacccgctcattatcaagttaaagagaaaccattcaggaaccgatacccca acctctcctctacattcgcgtctgtgacggctcgactgaatgatccaccaccgattgtaaaggagttaccaccgcccgga tcctacgaagtagccgactcctacaagaaatcccaggttgtaactgagcatgccaggccgaggaatgacgaggcctcacg taaacatggctccttcctgtcggccgcctctaggttcgctcctcctcgggatgttactgtgggacaaccagaccaagaca ttccaggtcccggcgcttatgatgccaaggactccttggtcggtaagggaggtctaatggtcactaaagacagacgattc agagactctaaggctgagggtccaggacccggcagctacgagttttcaccacttatacaagacacagtgcttaaaggaac cttcaacgccaccctgaataacccaatagcaccacaaatggatatgtcaagtcacgtgggaggagccacaaaacatgcat tcctattgggcgtgtga |
|
| Transcript ID | pfu_aug1.0_631.1_43760.t2 |
| Definition | - |
>pfu_aug1.0_631.1_43760.t2 atgaaagtggtttatttgactctccgatgttttgatgaagtgcgaggtccaggggcgtacaatattgctggtatggggtc agacagcatgaggagggcgtacatagagagtaccaggaaaggggtgtttggaaccacatcagtgaggatcaagcctatca cgaggaaagatgaccaagaacaacctggacccgctcattatcaagttaaagagaaaccattcaggaaccgataccccaac ctctcctctacattcgcgtctgtgacggctcgactgaatgatccaccaccgattgtaaaggagttaccaccgcccggatc ctacgaagtagccgactcctacaagaaatcccaggttgtaactgagcatgccaggccgaggaatgacgaggcctcacgta aacatggctccttcctgtcggccgcctctaggttcgctcctcctcgggatgttactgtgggacaaccagaccaagacatt ccaggtcccggcgcttatgatgccaaggactccttggtcggtaagggaggtctaatggtcactaaagacagacgattcag agactctaaggctgagggtccaggacccggcagctacgagttttcaccacttatacaagacacagtgcttaaaggaacct tcaacgccaccctgaataacccaatagcaccacaaatggatatgtcaagtcacgtgggaggagccacaaaacatgcattc ctattgggcgtgtga |
|
Protein
| Protein ID | pfu_aug1.0_631.1_43760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_631.1_43760.t1 MTGQASSWYKQIQDTQRFTPLKKVTPSPGSYNDPRNAFDSLKRITGLKRSPFGQTSVRFNPEPHVKKTPGPGAYNIAGMG SDSMRRAYIESTRKGVFGTTSVRIKPITRKDDQEQPGPAHYQVKEKPFRNRYPNLSSTFASVTARLNDPPPIVKELPPPG SYEVADSYKKSQVVTEHARPRNDEASRKHGSFLSAASRFAPPRDVTVGQPDQDIPGPGAYDAKDSLVGKGGLMVTKDRRF RDSKAEGPGPGSYEFSPLIQDTVLKGTFNATLNNPIAPQMDMSSHVGGATKHAFLLGV |
|
| Protein ID | pfu_aug1.0_631.1_43760.t2 |
| Definition | - |
>pfu_aug1.0_631.1_43760.t2 MKVVYLTLRCFDEVRGPGAYNIAGMGSDSMRRAYIESTRKGVFGTTSVRIKPITRKDDQEQPGPAHYQVKEKPFRNRYPN LSSTFASVTARLNDPPPIVKELPPPGSYEVADSYKKSQVVTEHARPRNDEASRKHGSFLSAASRFAPPRDVTVGQPDQDI PGPGAYDAKDSLVGKGGLMVTKDRRFRDSKAEGPGPGSYEFSPLIQDTVLKGTFNATLNNPIAPQMDMSSHVGGATKHAF LLGV |
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