Gene
| Gene Model ID | pfu_aug1.0_6311.1_67416 |
|---|---|
| Locus | scaffold6311.1 : 28902 ... 39195 : - |
| To GenomeBrowser | scaffold6311.1:28902..39195 |
| Genes list of scaffold | scaffold6311.1 |
| Synonym | pfu_aug2.0_392.1_07450 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6311.1_67416.t1 | 5 | 1 | Sod_Cu | 12 | 63 | 0.0 | 157.3 | 6.3e-10 | 4.7e-06 | 26.8 |
| pfu_aug1.0_6311.1_67416.t1 | 5 | 2 | Sod_Cu | 107 | 236 | 0.0 | 157.3 | 1.4e-16 | 1.0e-12 | 48.3 |
| pfu_aug1.0_6311.1_67416.t1 | 5 | 3 | Sod_Cu | 253 | 395 | 0.0 | 157.3 | 1.2e-18 | 9.2e-15 | 55.0 |
| pfu_aug1.0_6311.1_67416.t1 | 5 | 4 | Sod_Cu | 418 | 532 | 0.0 | 157.3 | 2.6e-11 | 1.9e-07 | 31.3 |
| pfu_aug1.0_6311.1_67416.t1 | 5 | 5 | Sod_Cu | 546 | 566 | 0.0 | 157.3 | 0.44 | 3300.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6311.1_67416.t1 | gi|260817559|ref|XP_002603653.1| | hypothetical protein BRAFLDRAFT_235549 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 6 |
| egg-4cell | 1 |
| 8-16cell | 4 |
| >Adult tissues | |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6311.1_67416.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6311.1_67416.t1 atggcttcaaactttccacctgctgcaacaggtacaaatgaccagtatgaagtaggggatctgagtggaaaatatggctt acttaccggaagaaatagtctaaatgctaattataccgactggaatttaccattattcggagccaatagcattataggta gatctattgtgattcataaaactgcacagtccgcaagatgggtttgtgctaatgttgaggatgttcagtcgtacaaaatt gctcgtgctacattccactacccggttataggttacatgattttcaagcagccagttaatgattggcaatatgcagatac acagatatacgtagagctgaactatggcgacggcacagcaacgtcctctgtgaatcatgattggcatgtgcaccagacga caatcggtgacgacatggatgcgtcatcaggtcgatgtatgtccgtaggaggtcattacaatccatataatgtggacctc catggtaattaccagaccgtttgttcaaccaatagtcctctaagatgtgaagtcggggatttgtccaaaaaacatggccg cctcgatattcgtacaagtggcggtggcatgcagcgtgcttttttcacagacgttgatctgcctctgtcggggcctctta gcattgtgggtaaatcgatcgttatccacgccccaaacagcggttcagctagattttcttgtgctaatatacttcctgtc ccggaaaggaaggtcaaggtcgatacgtggtacaaaaattcacagtcgtctgtttccggtagtgttgtattgactgaaaa tacagacggcgttctaactgatataacaacaaccgaatttaatctcgcaaacctcgccagtgaagcaaatggcctgcacg tccaccaatatccagttgatatggacaagacaacgagttcaccttgtgcggctacttctgttggcggacattttattcca tatgagtggaatatagcgaacagtccatcaaatggaaatggatcagacgaccaatatgaggtgggtgacttgagcgggag gtacggtagtccattactcggtcagacctcatatcgaggtacattccatgattcaaacctccccctccgaggtcctctaa gtgtagtgggacggtctattgttatacataaatctgacaatcaggcttctagatgggtgtgtggcgatattgtagaagac acgtcatcgacttccggcaaactgtaccaatcaaaagccacgtttaatcaaggcgatattcaaggctacattcatctgac gacaggtcataattggcacgtgcatgttagccaagttaatggtgatgcaacttccggttgtaatacacccggtggacact acaatccgttccattctaatactacgagtggttatacggaatgtagcttctccaatcctttacgatgtgagctaggtgac cagtccgggaaagtaggacagtatgacgtaggtgggggcaggaaattcttcacggatgtcaacctccctattatgggtcg atatggagtgactggtcgttctttcgtggtgcacggtccaaataatgctgctgcacgcgtggcttgcgcagacattttac ccattggaatgccaacagtatcaatgtcttttcctgttaaaaatcccctagataaattgggctttcatatttcacatgtt cacatgtgcattccttgtgacaagacctttccatggataccaaaatttttgaccttgtga |
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Protein
| Protein ID | pfu_aug1.0_6311.1_67416.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6311.1_67416.t1 MASNFPPAATGTNDQYEVGDLSGKYGLLTGRNSLNANYTDWNLPLFGANSIIGRSIVIHKTAQSARWVCANVEDVQSYKI ARATFHYPVIGYMIFKQPVNDWQYADTQIYVELNYGDGTATSSVNHDWHVHQTTIGDDMDASSGRCMSVGGHYNPYNVDL HGNYQTVCSTNSPLRCEVGDLSKKHGRLDIRTSGGGMQRAFFTDVDLPLSGPLSIVGKSIVIHAPNSGSARFSCANILPV PERKVKVDTWYKNSQSSVSGSVVLTENTDGVLTDITTTEFNLANLASEANGLHVHQYPVDMDKTTSSPCAATSVGGHFIP YEWNIANSPSNGNGSDDQYEVGDLSGRYGSPLLGQTSYRGTFHDSNLPLRGPLSVVGRSIVIHKSDNQASRWVCGDIVED TSSTSGKLYQSKATFNQGDIQGYIHLTTGHNWHVHVSQVNGDATSGCNTPGGHYNPFHSNTTSGYTECSFSNPLRCELGD QSGKVGQYDVGGGRKFFTDVNLPIMGRYGVTGRSFVVHGPNNAAARVACADILPIGMPTVSMSFPVKNPLDKLGFHISHV HMCIPCDKTFPWIPKFLTL |
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