Gene
| Gene Model ID | pfu_aug1.0_6346.1_67424 |
|---|---|
| Locus | scaffold6346.1 : 19336 ... 37856 : + |
| To GenomeBrowser | scaffold6346.1:19336..37856 |
| Genes list of scaffold | scaffold6346.1 |
| Synonym | pfu_aug2.0_1164.1_14832 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6346.1_67424.t1 | 4 | 1 | OST-HTH | 453 | 518 | 7.6e-22 | 76.9 | 1.6e-12 | 7.8e-09 | 35.2 |
| pfu_aug1.0_6346.1_67424.t1 | 4 | 2 | OST-HTH | 530 | 590 | 7.6e-22 | 76.9 | 0.0075 | 37.0 | 4.2 |
| pfu_aug1.0_6346.1_67424.t1 | 4 | 3 | OST-HTH | 606 | 644 | 7.6e-22 | 76.9 | 0.00029 | 1.4 | 8.7 |
| pfu_aug1.0_6346.1_67424.t1 | 4 | 4 | OST-HTH | 671 | 727 | 7.6e-22 | 76.9 | 9.2e-09 | 4.5e-05 | 23.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6346.1_67424.t1 | gi|348532712|ref|XP_003453850.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_6346.1_67424.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6346.1_67424.t1 atgcactcgtcttatgccaactctcaagaatgtcgattccctctggccaagaagagaatggaaggagaggatgtgtacgg cggtaaaataaaagtcaagttcccagataccgacgataaagaagaacgcaaagattctgaccatttcggaaaacctcagc aggataaaccattctcacagttcgatagtaaacatagtaaagaggattcaaagaatgtaggaaagtcaaacgggaataaa gggaagaacaaaggcaaaaagaatgctgaaaatcaaggatctaatgatgactctataaacactaataataataaaacttc aacgcaaagtcaaaaccaggaaactgcctcccccaacaaccttcagaatgttgtgaataaatttgccaaggacaaaaaag ggagtcgtcaagtgttaatgttacagcagcaactgtatcaagaaggccaagaaaaaccgtcgttgtccgattccgagatg aacaggtacaatagctatcagcagagcaccacctaccaatataaccaaagtggaggaggtggttatcaacactaccaatc ctactacaaccaacaacggtacaatgttcccaactccggtcaagcaaccagcagcttttaccattatggctcggcccata accagagttttagcacgtacagtgcgtacaagagtttatatgaaggcaatggcagcaactataggaataagaagtatatg aacaatggttacggcaatgcaaataaccatattccgtaccacaaccataatcagcagcagcagcaaggtgggggttgcgt cccttttaatccaggtccgtacaatgtcccacccccaggttattgcagtgaaggggaggggactcagcctgctttctcca aaaacaccttttgtcctatcacttccccctccccctgccccagcactagcagcagttcttcatgtgaacagatggacagt gcagactgggactctatctcaggacctgtagagttactagtctccaaccttgactataacatcagtgctaaggagtggcg gaaaattctctttacgaccttccatcctcatgtcagggttttgaatgtacatgtaaagacacagccagacaacaccagcc tgggtatggtaaagattccgagtgtagaggaggcacgcttcgcaatatcccagttccatcgtaagaaaatcggctataaa aggatccatgttacactcaagactgaggattctcagagacctgcatctagcacaaaggcagaagccatggcattgttatc tgaagctaaaggaaatgttctgcctctctttaaattcattgaactatttgataaaagtcctttgttaagtcagcagttga accagttcagtcgtgagatgatagatttgttgaagcagcagccccagggccgtatgccgtttagtaagtttataccaacc taccatcatttctttggacggcagtgtcgagtggccgactacggttacaacagactcaaggacttgtttgaagcagtacc tcatgttgtacagattgaagaagagagtgaggagagactgatccacctaacggagcctgagctcagaaaagttctggcgg agcagctggtaacgctacttaacgtccagaagaaccagtgtataccacttcaccacctgatgtctgcctttacttgtcat ttcggcttcaatataccactgtacgatttcaatgtggactcggaggaagaactactgaccaaactgaagcatgtagtaaa ggtggagaaagtaaacaggtgtaaatatgtgaaactagaagacagaagtgagacccctcaactggctcatcaagttctac aactcttgatggaccacagcgggggtagtctccccttgatggagctctgcagtagatacaaatctatttatggtgtggac tgtgacatcaagaccatcaaagatgaacttctagattttgtacaggttacaggagacgacgagtctgcagtcatcagtct aacggcgctacaggcctttgccagggacgtcaggatcttactatacatacattctaagctactcatctcagactttgaga gggtctataaggaacactttggggtagagattaagccagcattatatggctgtcctacgatcactgcactgttggaatcc ataccccacgttgtaaccttcagtggtaaaggactacacagagtggtgcagttgtcggctaatgttacaggtttgccatg tagccgtaagccatcatattcaccctcggccatggattctgatacccagtctagtgattctggggttacagatactcatc ctgaagttgaggacattatgaagcacgagtgtatgacagccaaatcatccagcctcctggagggtcccgtaccgtcagcc attccctcaccggaccttagacctgttgtccaatcagagacagacttgatgaagtttgaaactgtggctgatttggttga aaaactgatgaccttgagtgaggaggaaaaaaagggacagaaaacgcccctttgtcggacacctacctccgagttgttac aacttgccgctcagtgtctgctctccaggcctccctctactgaaccagaggtcaaggacactccagagagcaaaggtcag actggtgagaaaggtagctcctcaaaaggaataaaagacgagtctcaggtcaaggtcagtgacgaaaagggatggtggaa agtaggtcaagatcaggtcaaagatgaagagacattggctgacaaggccaagaaggagagcttcgaaaagacggagcagg agaaaattttgagggaggctatcttcactcatctaaagaaagaagttgaaagtcgaagggacagtaaggtaaaggaatct acaccttcatctgaagggtttgtaggcaaattggttgagatgaaaataccgacagcacctactggaaagttcctgaatcg ttcagccgacagtgtatcatacgataatatgtttcgtcaggatctgccgctggaaacgagctcggtgaagtccgactcca gcacacttagcgacagatcacaggagtctcctagaaaatcgcctcgaaaaccgaggatcgctgcaaaattccctgttcgc atagacatgggaaattaa |
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Protein
| Protein ID | pfu_aug1.0_6346.1_67424.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6346.1_67424.t1 MHSSYANSQECRFPLAKKRMEGEDVYGGKIKVKFPDTDDKEERKDSDHFGKPQQDKPFSQFDSKHSKEDSKNVGKSNGNK GKNKGKKNAENQGSNDDSINTNNNKTSTQSQNQETASPNNLQNVVNKFAKDKKGSRQVLMLQQQLYQEGQEKPSLSDSEM NRYNSYQQSTTYQYNQSGGGGYQHYQSYYNQQRYNVPNSGQATSSFYHYGSAHNQSFSTYSAYKSLYEGNGSNYRNKKYM NNGYGNANNHIPYHNHNQQQQQGGGCVPFNPGPYNVPPPGYCSEGEGTQPAFSKNTFCPITSPSPCPSTSSSSSCEQMDS ADWDSISGPVELLVSNLDYNISAKEWRKILFTTFHPHVRVLNVHVKTQPDNTSLGMVKIPSVEEARFAISQFHRKKIGYK RIHVTLKTEDSQRPASSTKAEAMALLSEAKGNVLPLFKFIELFDKSPLLSQQLNQFSREMIDLLKQQPQGRMPFSKFIPT YHHFFGRQCRVADYGYNRLKDLFEAVPHVVQIEEESEERLIHLTEPELRKVLAEQLVTLLNVQKNQCIPLHHLMSAFTCH FGFNIPLYDFNVDSEEELLTKLKHVVKVEKVNRCKYVKLEDRSETPQLAHQVLQLLMDHSGGSLPLMELCSRYKSIYGVD CDIKTIKDELLDFVQVTGDDESAVISLTALQAFARDVRILLYIHSKLLISDFERVYKEHFGVEIKPALYGCPTITALLES IPHVVTFSGKGLHRVVQLSANVTGLPCSRKPSYSPSAMDSDTQSSDSGVTDTHPEVEDIMKHECMTAKSSSLLEGPVPSA IPSPDLRPVVQSETDLMKFETVADLVEKLMTLSEEEKKGQKTPLCRTPTSELLQLAAQCLLSRPPSTEPEVKDTPESKGQ TGEKGSSSKGIKDESQVKVSDEKGWWKVGQDQVKDEETLADKAKKESFEKTEQEKILREAIFTHLKKEVESRRDSKVKES TPSSEGFVGKLVEMKIPTAPTGKFLNRSADSVSYDNMFRQDLPLETSSVKSDSSTLSDRSQESPRKSPRKPRIAAKFPVR IDMGN |
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