Gene
| Gene Model ID | pfu_aug1.0_6361.1_31175 |
|---|---|
| Locus | scaffold6361.1 : 1796 ... 11880 : + |
| To GenomeBrowser | scaffold6361.1:1796..11880 |
| Genes list of scaffold | scaffold6361.1 |
| Synonym | pfu_aug2.0_12.1_06727 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6361.1_31175.t1 | 2 | 1 | DUF4606 | 226 | 240 | 1.5e-18 | 66.7 | 0.68 | 3400.0 | -1.9 |
| pfu_aug1.0_6361.1_31175.t1 | 2 | 2 | DUF4606 | 335 | 433 | 1.5e-18 | 66.7 | 3.1e-22 | 1.5e-18 | 66.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6361.1_31175.t1 | gi|260815511|ref|XP_002602516.1| | hypothetical protein BRAFLDRAFT_93823 [Branchiostoma floridae] | 1.0e-11 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6361.1_31175.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6361.1_31175.t1 atgcatctatctcaccagcagccaccttcaaagttcagtaaatctctggatattcccaaatttggtcgtcccacacggag tcccaggacaccgtctacatctctacagtcttatagtgatacctttgaagaatcatcacagaaactacataattactctg acactttcatcagcgagtctgaagacattagtcatggaaaagatacaaaacaaagtgccactgtcattgatactgctagg acagacagaaggaatcagagtaggtctgtacgtctttatgatgaagttactgaagttcccacagagaggattgatactgt gatctcaggttatattgaaacagagcatcctaggactgttactgttggtatagagacttgtatttctgagctggaaacag accagttccgcaccgtcacagagagactagaatctcatggatccgatacagaaaggataaattcctctccctcacatctc tactcatactcagatacattccaatcaacgttgcagtccaaagatagatcgtatggagataaatactcacagtcaggaga tgaggaaaccagatctgagtatactgacagccatactgttgactactcccggacatcagcctctgggacacttactgacc acaccagcccagcaatgacatttgaggagtataccttatcatcagagttattacaacaacaacttgaggaagacgaacga cagcggacaaaggaagctgaagagaactttgtgtcacacctaatatctgtagtacgacaaaaaccattcagggaaatgga cattgaggaattgatagacagagaaatagaggatataccagaggaagaagacctccctccacagaaagttcatttcttaa agaaaaaacttcatttgttaaagaaaaagaaaaggaaaggtgatcctactccagaaccagagattaaccaatgggagaca cagaaagagcagagaattactgattacggccttcatccagcgatcatggagaaattaaaactgaaaaatttcataatggc catggaaaaggcagcaaaggaagattttcatgatcctaaaaagtgcagagaatgcagggaccatgagagtgctattgaca cagcggcagctgagaggaattttataaggataaaaacccgagataccagacagagggtgatggaagaccattatcataaa catctagtcaaaatggattccatcaatctgatagcagacatagctcgatccttacctcgacacactgacgatccccagga catagaggatcaactgttcaaaggattaaatctctcgaagtctgtgacacaaaacagggtcaatggtaatggttaa |
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Protein
| Protein ID | pfu_aug1.0_6361.1_31175.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6361.1_31175.t1 MHLSHQQPPSKFSKSLDIPKFGRPTRSPRTPSTSLQSYSDTFEESSQKLHNYSDTFISESEDISHGKDTKQSATVIDTAR TDRRNQSRSVRLYDEVTEVPTERIDTVISGYIETEHPRTVTVGIETCISELETDQFRTVTERLESHGSDTERINSSPSHL YSYSDTFQSTLQSKDRSYGDKYSQSGDEETRSEYTDSHTVDYSRTSASGTLTDHTSPAMTFEEYTLSSELLQQQLEEDER QRTKEAEENFVSHLISVVRQKPFREMDIEELIDREIEDIPEEEDLPPQKVHFLKKKLHLLKKKKRKGDPTPEPEINQWET QKEQRITDYGLHPAIMEKLKLKNFIMAMEKAAKEDFHDPKKCRECRDHESAIDTAAAERNFIRIKTRDTRQRVMEDHYHK HLVKMDSINLIADIARSLPRHTDDPQDIEDQLFKGLNLSKSVTQNRVNGNG |
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