Gene
| Gene Model ID | pfu_aug1.0_6421.1_52763 |
|---|---|
| Locus | scaffold6421.1 : 14721 ... 27341 : - |
| To GenomeBrowser | scaffold6421.1:14721..27341 |
| Genes list of scaffold | scaffold6421.1 |
| Synonym | pfu_aug2.0_3875.1_19216 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6421.1_52763.t1 | 5 | 1 | zf-H2C2_2 | 24 | 38 | 1.9e-13 | 49.9 | 2.1e-05 | 0.077 | 13.3 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 1 | zf-C2H2 | 28 | 50 | 8.4e-08 | 32.1 | 7.2e-08 | 0.00027 | 21.1 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 1 | zf-C2H2_4 | 28 | 50 | 1.1e-07 | 31.6 | 8.8e-07 | 0.0033 | 17.6 |
| pfu_aug1.0_6421.1_52763.t1 | 5 | 2 | zf-H2C2_2 | 42 | 66 | 1.9e-13 | 49.9 | 3.9e-11 | 1.4e-07 | 31.4 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 2 | zf-C2H2 | 56 | 78 | 8.4e-08 | 32.1 | 1.4e-08 | 5.1e-05 | 23.3 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 2 | zf-C2H2_4 | 56 | 78 | 1.1e-07 | 31.6 | 5.8e-07 | 0.0021 | 18.2 |
| pfu_aug1.0_6421.1_52763.t1 | 5 | 3 | zf-H2C2_2 | 70 | 95 | 1.9e-13 | 49.9 | 2.9e-09 | 1.1e-05 | 25.4 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 3 | zf-C2H2 | 84 | 107 | 8.4e-08 | 32.1 | 0.001 | 3.8 | 8.0 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 3 | zf-C2H2_4 | 84 | 107 | 1.1e-07 | 31.6 | 0.00012 | 0.44 | 10.9 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 4 | zf-C2H2 | 337 | 351 | 8.4e-08 | 32.1 | 0.19 | 720.0 | 0.8 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 4 | zf-C2H2_4 | 337 | 351 | 1.1e-07 | 31.6 | 0.19 | 700.0 | 0.9 |
| pfu_aug1.0_6421.1_52763.t1 | 5 | 4 | zf-H2C2_2 | 356 | 362 | 1.9e-13 | 49.9 | 0.045 | 170.0 | 2.7 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 5 | zf-C2H2 | 357 | 379 | 8.4e-08 | 32.1 | 0.45 | 1700.0 | -0.3 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 5 | zf-C2H2_4 | 357 | 376 | 1.1e-07 | 31.6 | 0.37 | 1400.0 | 0.0 |
| pfu_aug1.0_6421.1_52763.t1 | 5 | 5 | zf-H2C2_2 | 375 | 392 | 1.9e-13 | 49.9 | 0.016 | 59.0 | 4.2 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 6 | zf-C2H2_4 | 386 | 408 | 1.1e-07 | 31.6 | 0.00032 | 1.2 | 9.6 |
| pfu_aug1.0_6421.1_52763.t1 | 6 | 6 | zf-C2H2 | 387 | 408 | 8.4e-08 | 32.1 | 0.0022 | 8.0 | 7.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6421.1_52763.t1 | gi|334327369|ref|XP_001372853.2| | 3.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_6421.1_52763.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6421.1_52763.t1 atggactacaacatgctcgagtccagtaccccagtggatatgggcacaggtctgttaccaggatatatggtggagaaacc gtttgagtgtaacgtctgttacaaacgattctcacagaaagcccatttaaccacgcataggaggactcatactggagaaa aaccatatgcctgccatatatgtaacaaacgatttgcccagtcatcacacctgaatacacataaaaggatacatacaggt gagaagccgttttactgtgctgtgtgctatatgggatttgttaacaagaagagactggagcttcaccttcaggatgtaca taagtttgatcagagtatgttaaagggagacgatgtagaccccgcccaagacaatcccctctcctttgtggatttcgtac cagataactccccttcaatggttggtacaggacaaggattgcataatataatggactctccacaaagtattgaaccggca atatcagggagtcatcgtcgtaaacctatggtcgtcagtagattcagcagcgaggaacctagtggcactatgatcatggg tctgcctcaggactttgtggaggatggagaaggtatgctgagtaatataaagacagagcatggtgtgccagaggactgta tgggggaactgaagaaggaaaacattggtcagggtaaacatgacgaggatggtgatgtagataaaattccttctaccagt agtgctagtaagatatgtgaggactcgttaaatgatgatgcagtatgtggtgtgagtacggcagattgtaataatgaagt atcggctgatgaggcagcaagtgttaccagtgagagcaatctgtccgggtctgaacaaagcctgtcatctgcccataaaa aatccatgctttctcaaggatctggtcaaaatagacgtcactgccgaaaacgaatgagaacatccggtattaatagcttc aaaatgtcaagactgtcacattctcctattggtactaactccagagtgtgtttggttaactttacaagtgatgacctttt gactcatatgatgtcccgtgatgacgtgtataagtgtgacttttgttgtattatattccaagatgctgctatgtatcatc tccatcgaagtatgcatgacaaaatggacatacgatgctgtaataattgtggaaagctagccaatgatagatatgatttc attgcacactttctcagtgaacataagtga |
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Protein
| Protein ID | pfu_aug1.0_6421.1_52763.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6421.1_52763.t1 MDYNMLESSTPVDMGTGLLPGYMVEKPFECNVCYKRFSQKAHLTTHRRTHTGEKPYACHICNKRFAQSSHLNTHKRIHTG EKPFYCAVCYMGFVNKKRLELHLQDVHKFDQSMLKGDDVDPAQDNPLSFVDFVPDNSPSMVGTGQGLHNIMDSPQSIEPA ISGSHRRKPMVVSRFSSEEPSGTMIMGLPQDFVEDGEGMLSNIKTEHGVPEDCMGELKKENIGQGKHDEDGDVDKIPSTS SASKICEDSLNDDAVCGVSTADCNNEVSADEAASVTSESNLSGSEQSLSSAHKKSMLSQGSGQNRRHCRKRMRTSGINSF KMSRLSHSPIGTNSRVCLVNFTSDDLLTHMMSRDDVYKCDFCCIIFQDAAMYHLHRSMHDKMDIRCCNNCGKLANDRYDF IAHFLSEHK |
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