Gene
| Gene Model ID | pfu_aug1.0_6425.1_31199 |
|---|---|
| Locus | scaffold6425.1 : 2856 ... 20181 : + |
| To GenomeBrowser | scaffold6425.1:2856..20181 |
| Genes list of scaffold | scaffold6425.1 |
| Synonym | pfu_aug2.0_324.1_13995 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6425.1_31199.t1 | 5 | 1 | BING4CT | 128 | 149 | 1.2e-36 | 124.0 | 0.28 | 830.0 | -0.5 |
| pfu_aug1.0_6425.1_31199.t1 | 5 | 2 | BING4CT | 177 | 196 | 1.2e-36 | 124.0 | 0.83 | 2500.0 | -2.0 |
| pfu_aug1.0_6425.1_31199.t1 | 5 | 3 | BING4CT | 302 | 323 | 1.2e-36 | 124.0 | 0.28 | 830.0 | -0.5 |
| pfu_aug1.0_6425.1_31199.t1 | 5 | 4 | BING4CT | 351 | 370 | 1.2e-36 | 124.0 | 0.83 | 2500.0 | -2.0 |
| pfu_aug1.0_6425.1_31199.t1 | 2 | 1 | WD40 | 372 | 409 | 1.9e-08 | 33.8 | 7.4e-10 | 2.2e-06 | 27.3 |
| pfu_aug1.0_6425.1_31199.t1 | 5 | 5 | BING4CT | 458 | 535 | 1.2e-36 | 124.0 | 3.4e-38 | 1.0e-34 | 117.9 |
| pfu_aug1.0_6425.1_31199.t1 | 2 | 2 | WD40 | 465 | 479 | 1.9e-08 | 33.8 | 0.62 | 1800.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6425.1_31199.t1 | gi|291242111|ref|XP_002740951.1| | PREDICTED: WD repeat-containing protein 46-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6425.1_31199.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6425.1_31199.t1 atgaatgaagatgctgggtttgttcaagcagaagaaggagaagatacaactttacttacacaacatgacattgttaaagc tgtggacattactagtgctcaaaagtacttcgatttagatttgaaagactttggaccatacagagttaattacacaagaa atgggaggtttcttctcattggtggaaatagaggtcatgtggcatccatagactggcagtcaaagcgtctgatgtgtgaa atgaatgtcatggaaaccacacatgatgtcaaatggctacatcaggagacaatgtttgctgcggctcagaagcagtggac gtacatatatgataaccagggtatagagctgcactgtttgaagaccctggattgtgcactgagactggagtttctaccct ttcatttcctcctggcctctgctagctccaagggttttctgtcttggttagatgtttccattggcaagcaagtggccgtc cataaaacaggtcaaggtcgtttagatgtcatgtgccaaaacccacagaatgccaccttatgtctcggtcatactggagg aacagtaactctttggtcacctaatgtcaaagaacctttagtgaagatgttatgtcacgggggcgggtacttcgatttag atttgaaagactttggaccatacagagttaactattcaaagaatgggaggtttcttctcattggtggaaatagaggtcat gtggcttccatagactggcagtcaaagcgtctgatgtgtgaaatgaacgtcatggaaaccacacatgatgtcaaatggct gcatcaggagacaatgtttgctgcggctcagaagcagtggacgtacatatatgataaccagggtatagagctgcactgtt tgaagaccttggattgtgcactgagactggagtttcttccctttcacttcctcctggcctctgctagctccaagggtttt ctgtcttggttagatgtttccattggcaagcaagtggcagtccataaaacaggtcaaggtcgtttagatgtcatgtgcca aaacccacagaatgccaccttatgtctcggtcatactggaggaacagtaactctgtggtcacctaacgtcaaagaaccat tagtgaagatgttatgtcatgggggtggggtgagatcagtgacagtggatagggcaggacagtatttggccacatcgggc cttgacaggaagttaaagatatgggatctgaggacgtataagatgttacaatgttataagacaggttatggtgctggtag catggccttctcacaaacaggactacttgcattaggcaaaggaaatctagtggaggtgtaccaggattgctgcagacaaa cagtaactaagccgtacctaacacacaagttgacatccacagtggaggcactacagttttgtccgtatgaggatgtccta ggtgttgggcatggagagggattcactagtctacttatacctggtgctggagaagccaactttgatgccttagaggacaa tccataccagagtaagaaacagagacgggaagctgaagtacagatgctcctcaataaaattccgtttgagatgattcacg tggatacagctaagataggacaacttgacgtgaagacgtacgaggagaaaatacagcagcataacaagatacattttctg aagcctaagaaagttcactttgagccatcatataaaatgaaaggaaagaataaatcaggtagaatagagaatagaaagaa ggccgtacaagaagaagagaaacggaatgtgataaaggaagtgaataaactcaaacaaagagagatggctgccaagtata aaacaaaggaactcaaatcagacaatgtcttagatagatttaagaaaaaagattttaattaa |
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Protein
| Protein ID | pfu_aug1.0_6425.1_31199.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6425.1_31199.t1 MNEDAGFVQAEEGEDTTLLTQHDIVKAVDITSAQKYFDLDLKDFGPYRVNYTRNGRFLLIGGNRGHVASIDWQSKRLMCE MNVMETTHDVKWLHQETMFAAAQKQWTYIYDNQGIELHCLKTLDCALRLEFLPFHFLLASASSKGFLSWLDVSIGKQVAV HKTGQGRLDVMCQNPQNATLCLGHTGGTVTLWSPNVKEPLVKMLCHGGGYFDLDLKDFGPYRVNYSKNGRFLLIGGNRGH VASIDWQSKRLMCEMNVMETTHDVKWLHQETMFAAAQKQWTYIYDNQGIELHCLKTLDCALRLEFLPFHFLLASASSKGF LSWLDVSIGKQVAVHKTGQGRLDVMCQNPQNATLCLGHTGGTVTLWSPNVKEPLVKMLCHGGGVRSVTVDRAGQYLATSG LDRKLKIWDLRTYKMLQCYKTGYGAGSMAFSQTGLLALGKGNLVEVYQDCCRQTVTKPYLTHKLTSTVEALQFCPYEDVL GVGHGEGFTSLLIPGAGEANFDALEDNPYQSKKQRREAEVQMLLNKIPFEMIHVDTAKIGQLDVKTYEEKIQQHNKIHFL KPKKVHFEPSYKMKGKNKSGRIENRKKAVQEEEKRNVIKEVNKLKQREMAAKYKTKELKSDNVLDRFKKKDFN |
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