Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_6444.1_02241
Locus scaffold6444.1 : 1 ... 6263 : +
To GenomeBrowser scaffold6444.1:1..6263
Genes list of scaffold scaffold6444.1
Synonym pfu_aug2.0_291.1_03952

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_6444.1_02241.t1 4 1 Cadherin 17 93 2.3e-16 59.8 1.0e-09 2.5e-06 27.6
pfu_aug1.0_6444.1_02241.t1 4 2 Cadherin 117 199 2.3e-16 59.8 7.9e-10 1.9e-06 27.9
pfu_aug1.0_6444.1_02241.t1 4 3 Cadherin 218 244 2.3e-16 59.8 0.023 58.0 4.0
pfu_aug1.0_6444.1_02241.t1 4 4 Cadherin 292 366 2.3e-16 59.8 0.0091 23.0 5.3
pfu_aug1.0_6444.1_02241.t1 1 1 EGF_3 383 419 8.0e-08 32.1 6.6e-11 1.6e-07 31.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_6444.1_02241.t1 gi|320167135|gb|EFW44034.1| 9.0e-28

Transcript
Transcript IDpfu_aug1.0_6444.1_02241.t1
Definition-
>pfu_aug1.0_6444.1_02241.t1
atactagatgtaaatgaagctcctgatgacatcatgctagataactcggaaattacggagaatacagaggccggaaaggt
cataggtcaactggccacgatagatcaggaccgtaaccaacagttcacatatactgtcgtagaaacaggacaggaaatag
gatacattgctgttcagggggacaaacttgtgactggcgatcgcaatttggactttgaaaaaatatctcagattcagata
tctattaacagtacagacaatggaacacccccaaaaacattgcagagagattttacattagcagtgctggatgctgagga
acctcctatagccatcatcatgactgacacgattgacgtcgctgaagatacgccccctcaagaaatcttgtctccaatcc
aagtggatgacccagatattggccaatcacatatatgtcaaaatatcaatagctccacccccttcacagtattgaccaat
gagaagaaggagatgagtttagtgttgacaggtgctctagattatgagaaaatacaaagttacaagttaattatcaggtg
cactgatggagactttgacattgaaaagagagtaaatgttaatattggagacgtaaatgaagcacccactgtgataagcc
tgagtgctggtacagtaaaggcagacgcagaggcaggtcatgtgatcggtacactacaagtccaggatcctgatgttgga
caaacacatacacttggtgtacatggagctaactcagatatacttaagatagaaggaagcaaactaattctaaaagcccc
aataccattgtcagaactaaaacagccttctccagtcctaaacattacaataatggcagcagataatgacaatacagagg
tccctgaagatgcagctctggggtacaatattgggaaattatataaccataatgaaagtctaggggaaaatattgtattt
gaactgactgaaaatccaaatgaagtcttccaaatcaaggataataagtttctggttttaaataagaatcttacagaagt
agaggggacctcaaggaagatcactatacgagtaaaagatatcgagaccttgaaaaccgaatcacagattataacaatat
ttattaaaagaatagctaggtgtatgaagagtgatggtaaaaattgtcatgaaaatgccagatgtgtacagatagacgac
tcggccaatcataaatgtgaatgtgagactggttaccaaggagacggatacacatgtgaagatatagatgactgtacccc
tgatccatgcaatggtaacgggagtgtgtggatgaagtcaatgagtttgcttgtatttgcaatgatggattttccggtga
aaactgtgatgtag

Protein
Protein IDpfu_aug1.0_6444.1_02241.t1
Definition-
>pfu_aug1.0_6444.1_02241.t1
ILDVNEAPDDIMLDNSEITENTEAGKVIGQLATIDQDRNQQFTYTVVETGQEIGYIAVQGDKLVTGDRNLDFEKISQIQI
SINSTDNGTPPKTLQRDFTLAVLDAEEPPIAIIMTDTIDVAEDTPPQEILSPIQVDDPDIGQSHICQNINSSTPFTVLTN
EKKEMSLVLTGALDYEKIQSYKLIIRCTDGDFDIEKRVNVNIGDVNEAPTVISLSAGTVKADAEAGHVIGTLQVQDPDVG
QTHTLGVHGANSDILKIEGSKLILKAPIPLSELKQPSPVLNITIMAADNDNTEVPEDAALGYNIGKLYNHNESLGENIVF
ELTENPNEVFQIKDNKFLVLNKNLTEVEGTSRKITIRVKDIETLKTESQIITIFIKRIARCMKSDGKNCHENARCVQIDD
SANHKCECETGYQGDGYTCEDIDDCTPDPCNGNGSVWMKSMSLLVFAMMDFPVKTVM

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495