Gene
| Gene Model ID | pfu_aug1.0_6452.1_60020 |
|---|---|
| Locus | scaffold6452.1 : 44206 ... 68145 : - |
| To GenomeBrowser | scaffold6452.1:44206..68145 |
| Genes list of scaffold | scaffold6452.1 |
| Synonym | pfu_aug2.0_571.1_04347 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6452.1_60020.t1 | 1 | 1 | Integrin_alpha2 | 249 | 636 | 8.7e-32 | 110.5 | 3.3e-35 | 1.2e-31 | 110.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6452.1_60020.t1 | gi|148677301|gb|EDL09248.1| | integrin alpha 9, partial [Mus musculus] | 7.0e-29 |
Transcript
| Transcript ID | pfu_aug1.0_6452.1_60020.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6452.1_60020.t1 atggccgcagcggaaaactccgtaactgcttgtgcccctagatggataaacaaagtcaactcgagcgagtactacatgaa tggactttgctatgttataccatcaggatattttgctgaaaccaggtttataacacccagggtacgctcactactaaacc agttcccggacaaacagcacatcgcacctgattcggcccggaatgatatgacatgggaatacggattaggaacagccggc ttgtctgttatttacaatttgagtagtcagaggacttcggtgtcgtcagagaccttgttattggtaggagcacccacgta cagcaagcttacaaaatataacaagttctatacgagcacagtggagcagggagcagtgttcgtgtaccgactgaaagaaa atcaggctgatgctatccagatgctacagagctccactacagcaaagtcgagatttggtatggcaatgagtgacttagga gacattaacggggatgactttcacgatgttgtgattggagctccttttgaagaggaccaaaaaggggtgatttatattta caatggatacaaaaatggatttttggaaacacaaaggattgtgggaaatgacatggacacgagtcttagaggatattttg gatattcgtttgctcagaacaatattaactttaatggagataaatccaatgagtttgcagtgggtgcctttatgtcagac agcgcggtcatcctatttacccagcctgtgatagccatgcaggttacagctaggcagtcgacaaatctaacgaccatcgg tgaccctgatatgacaattcgtgcttgctttaaatatactggtgatagtacaattctaccaggagatgttaatgttgact ataagataagagctgatgtagagttcagcggaaggactaagcgagtgtgtatggttaacggccaattctgtgactatgaa gtgatggaacttaaccagcaaatcccgggatttaattttgatcctaaatgtctcacccccttcacagtgagacttactga cacgcaagaaatccgagagctgtttatcccaatcgtattcagtatccagttcaatatttctgacgccaatgcctgcactc gtaatatatgtcccgttattaaccgtttctatggaaaccttgacaatccaaccaccagggaagtgaaggcagctacggtt gatctgaagaagaatggatgtggtgcagacaacttatgtcaaacttatctaacgctacagtccgttgttgtgaagtatca tgactctgaaaacgtacttattctcggtcccaaatctaaaatgaccgtggacgtcaccgtgagagtgagcaatgaaccgt catataatacgaaaattagattcttatgtgaccaagaactttcatacgtacgttcaattgatgttggttcacaaatcgga atgaagtgctcagttattcggacaccgtttggacggatcgaaatcgaatgtgacacaaatccctctcagcttggagttga gagcggatctgagattaaagtaagcctggaatttgatgccagacttttgaagccaaatattaagtcgtttaaatttgaag ttgaggttgtaaccaaaagtattaatgcaaatataggacaaaatagaagaacactatacatacctgtaaaggcaaaagtg gatggagcatttgacaggttagcggccccagaagtgtacgttacaaagaaggacagagaagaatttgaaaccatgaagca catcatcacatttttcaacagaggtccgagtaacatagacgataacacaacctttaccgtaacatacccgtccggacgta taggagggaaatgggtcgtatccgtggtggagggagtggactgtacaaagcctgggggaagttgtcacatggtgaagtgt acagtacgaccaatccccgcagatagctacgttttattccgacttgtttattcggtggatccaaaattatatcaccgagc agggggtcaggatccgtctgtcaagtctgtagatctggtgtccaaggtggacgtccaattaccggcttccgtcacggcaa ctatgatacaaaatgacaatttcgctaaaaccgaagttttaccgtccaaacagaaagccgagccgataccgagttggata atagtcctggccgtagtggctgccttactcgtgataggaattattgtactaattctttggaaggataatcctggattatc ttag |
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Protein
| Protein ID | pfu_aug1.0_6452.1_60020.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6452.1_60020.t1 MAAAENSVTACAPRWINKVNSSEYYMNGLCYVIPSGYFAETRFITPRVRSLLNQFPDKQHIAPDSARNDMTWEYGLGTAG LSVIYNLSSQRTSVSSETLLLVGAPTYSKLTKYNKFYTSTVEQGAVFVYRLKENQADAIQMLQSSTTAKSRFGMAMSDLG DINGDDFHDVVIGAPFEEDQKGVIYIYNGYKNGFLETQRIVGNDMDTSLRGYFGYSFAQNNINFNGDKSNEFAVGAFMSD SAVILFTQPVIAMQVTARQSTNLTTIGDPDMTIRACFKYTGDSTILPGDVNVDYKIRADVEFSGRTKRVCMVNGQFCDYE VMELNQQIPGFNFDPKCLTPFTVRLTDTQEIRELFIPIVFSIQFNISDANACTRNICPVINRFYGNLDNPTTREVKAATV DLKKNGCGADNLCQTYLTLQSVVVKYHDSENVLILGPKSKMTVDVTVRVSNEPSYNTKIRFLCDQELSYVRSIDVGSQIG MKCSVIRTPFGRIEIECDTNPSQLGVESGSEIKVSLEFDARLLKPNIKSFKFEVEVVTKSINANIGQNRRTLYIPVKAKV DGAFDRLAAPEVYVTKKDREEFETMKHIITFFNRGPSNIDDNTTFTVTYPSGRIGGKWVVSVVEGVDCTKPGGSCHMVKC TVRPIPADSYVLFRLVYSVDPKLYHRAGGQDPSVKSVDLVSKVDVQLPASVTATMIQNDNFAKTEVLPSKQKAEPIPSWI IVLAVVAALLVIGIIVLILWKDNPGLS |
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