Gene
| Gene Model ID | pfu_aug1.0_6457.1_16928 |
|---|---|
| Locus | scaffold6457.1 : 1 ... 11695 : - |
| To GenomeBrowser | scaffold6457.1:1..11695 |
| Genes list of scaffold | scaffold6457.1 |
| Synonym | pfu_aug2.0_3790.1_02492 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6457.1_16928.t1 | 2 | 1 | Actin | 1 | 189 | 1.3999e-42 | 145.5 | 7.8e-34 | 1.2e-29 | 103.0 |
| pfu_aug1.0_6457.1_16928.t1 | 2 | 2 | Actin | 192 | 251 | 1.3999e-42 | 145.5 | 4.4e-15 | 6.5e-11 | 41.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6457.1_16928.t1 | gi|34979813|gb|AAQ83895.1| | actin-related protein 6 [Branchiostoma belcheri tsingtauense] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6457.1_16928.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6457.1_16928.t1 atgaatgaagttttctttgaggagtatgcatttaaatctgtattaagaaccaatgcatcccatctaattcagcataagta ccacaaagatcagaattcccctcacccttgttctatgatcgtagactcagggtattccttcacacatattattccctact accatggcaaaaagcttactccagctgtcaaaagggtcaatgttggagggaaagtgttaacaaatcatttgaaagaaatt atctcctacagacagttgatggttatggacgagacatacgttataaatcagctgaaggaagatgtctgttacgtgtccac acagttctccaaggatatggagatagctaagagaagaggaaaggagaatataatagccagggactatgtattacctgatt atacacatataaaaaggggatatgttagaccactcgaagagactaccggccgtgccaaggacggagaacagattatacgt atgaccaatgagcgttttgctgtaccagagctcctgttccacccttcagatgttggtattcaagaaatgggcatagctga ggctttagtctgttctgatgtacgtagtatggcaccacatgacattgatatcaaagtcacattaccagaaaatcctataa catatgcatgggaaggaggatgtatgttggccaaagacccgtccatgaagagattggtgataacaagggaagaatatgat gaacatggacatagtatctgcttcgacaaatttgatgtttga |
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Protein
| Protein ID | pfu_aug1.0_6457.1_16928.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6457.1_16928.t1 MNEVFFEEYAFKSVLRTNASHLIQHKYHKDQNSPHPCSMIVDSGYSFTHIIPYYHGKKLTPAVKRVNVGGKVLTNHLKEI ISYRQLMVMDETYVINQLKEDVCYVSTQFSKDMEIAKRRGKENIIARDYVLPDYTHIKRGYVRPLEETTGRAKDGEQIIR MTNERFAVPELLFHPSDVGIQEMGIAEALVCSDVRSMAPHDIDIKVTLPENPITYAWEGGCMLAKDPSMKRLVITREEYD EHGHSICFDKFDV |
|