Gene
| Gene Model ID | pfu_aug1.0_6470.1_52770 |
|---|---|
| Locus | scaffold6470.1 : 58576 ... 60157 : + |
| To GenomeBrowser | scaffold6470.1:58576..60157 |
| Genes list of scaffold | scaffold6470.1 |
| Synonym | pfu_aug2.0_107.1_23479 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6470.1_52770.t1 | 1 | 1 | TFIIE_beta | 68 | 128 | 8.1e-15 | 54.5 | 1.5e-18 | 1.1e-14 | 54.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6470.1_52770.t1 | gi|241625997|ref|XP_002407851.1| | transcription initiation factor IIE, beta subunit, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6470.1_52770.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6470.1_52770.t1 atggatccagcattacttaaagagagaaatgccttcatggcaagggcgaaagcccaacctgtggtagaaaaaagaaagaa gcaaaaaagtcatgatgagccatcatcgaagaaacacaagccttcttctgcacctaaagccaaaccaccagaaccgagtg tcaaatcttttgattacagaagtgcatctggggcatcgcaagtcaagttcagcattttggcaaaaattgtgaaacacatg agaacacgacatcaacaaggtgacactcatcctctcacattagatgagattttagatgagacaaaacagcttgatattgg aactaagaacaaacattggcttatcactgagtctctcatcaaaaatccaaaaatcaaacacgatttacatggctggggtg gcattctgtttgaggacatagaggaagcattacctaaagctgaaaatgctctaaaggtattggttgatcatatagtagtg gtggtacggccaaatgacaagaagagggtgctgttttacaatgataaatactgtagatttactgtagatgaagagttcca gaagttgtggagaggagtatctgtggaaggtcttgacgagaaaaagatcgaggaatatttggagaaacaaggaataacgt ccatgcaggatgttggacttaaaaagatgtctgctaatcaaaaacgcaagagaacagcgtccagaaagaacaagaacttc aagaagcataatgaacatcttggggacctcatgcaggactattctgacatgaccaaatga |
|
Protein
| Protein ID | pfu_aug1.0_6470.1_52770.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6470.1_52770.t1 MDPALLKERNAFMARAKAQPVVEKRKKQKSHDEPSSKKHKPSSAPKAKPPEPSVKSFDYRSASGASQVKFSILAKIVKHM RTRHQQGDTHPLTLDEILDETKQLDIGTKNKHWLITESLIKNPKIKHDLHGWGGILFEDIEEALPKAENALKVLVDHIVV VVRPNDKKRVLFYNDKYCRFTVDEEFQKLWRGVSVEGLDEKKIEEYLEKQGITSMQDVGLKKMSANQKRKRTASRKNKNF KKHNEHLGDLMQDYSDMTK |
|