Gene
| Gene Model ID | pfu_aug1.0_6509.1_67448 |
|---|---|
| Locus | scaffold6509.1 : 10146 ... 35538 : + |
| To GenomeBrowser | scaffold6509.1:10146..35538 |
| Genes list of scaffold | scaffold6509.1 |
| Synonym | pfu_aug2.0_121.1_03673 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | tropomyosin |
| Description | Tropomyosin full sequence. BLAST top hit to AB444943 (Crassostrea gigas). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_6509.1_67448.t1 | 2 | 1 | Tropomyosin | 6 | 83 | 0.0 | 334.3 | 1.5e-11 | 6.7e-09 | 35.1 |
| pfu_aug1.0_6509.1_67448.t1 | 2 | 1 | Tropomyosin_1 | 7 | 152 | 0.0 | 156.6 | 2.29813e-43 | 9.99995e-41 | 138.8 |
| pfu_aug1.0_6509.1_67448.t1 | 2 | 1 | Myosin_tail_1 | 9 | 163 | 7.2e-06 | 24.0 | 0.0081 | 3.6 | 5.1 |
| pfu_aug1.0_6509.1_67448.t1 | 4 | 1 | Laminin_II | 28 | 107 | 1.8e-07 | 31.0 | 2.4e-06 | 0.0011 | 18.7 |
| pfu_aug1.0_6509.1_67448.t1 | 2 | 2 | Tropomyosin | 48 | 284 | 0.0 | 334.3 | 0.0 | 0.0 | 312.4 |
| pfu_aug1.0_6509.1_67448.t1 | 4 | 2 | Laminin_II | 68 | 148 | 1.8e-07 | 31.0 | 7.3e-05 | 0.033 | 13.9 |
| pfu_aug1.0_6509.1_67448.t1 | 2 | 2 | Myosin_tail_1 | 103 | 270 | 7.2e-06 | 24.0 | 1.5e-06 | 0.00068 | 17.5 |
| pfu_aug1.0_6509.1_67448.t1 | 4 | 3 | Laminin_II | 132 | 213 | 1.8e-07 | 31.0 | 0.0078 | 3.5 | 7.3 |
| pfu_aug1.0_6509.1_67448.t1 | 2 | 2 | Tropomyosin_1 | 174 | 277 | 0.0 | 156.6 | 2.1e-08 | 9.3e-06 | 25.5 |
| pfu_aug1.0_6509.1_67448.t1 | 4 | 4 | Laminin_II | 202 | 276 | 1.8e-07 | 31.0 | 2.1e-06 | 0.00093 | 18.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_6509.1_67448.t1 | gi|219806594|dbj|BAH10152.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 2 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 5 |
| maleGonad | 2 |
| mantle | 4 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_6509.1_67448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6509.1_67448.t1 atggacgccatcaagaagaagatgattgcgatgaaaacggagaaagagaatgctcttgaccgcgcagagcagctcgaaca aaaattaagggatacagaagaagagaagacaaaggttgaagacgaattaagtgctcttcaaaagaaacactcgaacttag aaaacgaattcgattccatcaacgagaaatatcaggaagcacaaactaagttagaagcggcagagaaggcagcatccgag gcagaacaagaggttcaaggtttgaacaggaggatacagctgttagaggaagacttagaaagatctgaagaaagattaca gtctgccacagaaaaattagaggaggcttctaaagctgcagatgagagtgaaagaaaccgcaaggtcttggaaaacctga acaatgcatcagaggagaggtcagacgtgctggagaaacagttatctgaggccaaatggatcgcagaggaagcagacaaa aaatatgatgaggcagcacgtaaacttgctatcacagaggttgaccttgagcgtgccgaagctcgtttggaggcagctga ggccaaaattattaaccttgaagaagagctgacagttgtgggtgccaatatcaaaaccctacaggtccaaaatgaccagg cctcacagcgggaggacagctacgaggagaccattcgtgaccttacacagcggctgaaggatgctgaaaaccgtgccact gaagctgaaaggacagtatccaaattgcagaaagaagtcgacaggttggaagatgaattgctttcggagaaggagagata caaagcgattagtgacgagttggatcagacctttgccgagcttgcaggatactaa |
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Protein
| Protein ID | pfu_aug1.0_6509.1_67448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_6509.1_67448.t1 MDAIKKKMIAMKTEKENALDRAEQLEQKLRDTEEEKTKVEDELSALQKKHSNLENEFDSINEKYQEAQTKLEAAEKAASE AEQEVQGLNRRIQLLEEDLERSEERLQSATEKLEEASKAADESERNRKVLENLNNASEERSDVLEKQLSEAKWIAEEADK KYDEAARKLAITEVDLERAEARLEAAEAKIINLEEELTVVGANIKTLQVQNDQASQREDSYEETIRDLTQRLKDAENRAT EAERTVSKLQKEVDRLEDELLSEKERYKAISDELDQTFAELAGY |
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